Factsheet for VIT_06s0004g05800.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
endoplasmic reticulum 2
plasma membrane 3
extracellular 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	79.38	73.1
AT2G29525.1	Thale cress	plasma membrane	70.45	70.93
Os01t0850100-01	Rice	cytosol, golgi, mitochondrion, plasma membrane	74.23	66.26
GSMUA_Achr6P23620_001	Banana	golgi	71.13	66.13
Zm00001d012380_P002	Maize	plasma membrane	73.54	66.05
TraesCS3D01G358200.1	Wheat	golgi	73.88	65.95
TraesCS3B01G396900.1	Wheat	golgi	73.88	65.95
TraesCS3A01G365000.1	Wheat	plasma membrane	73.54	65.64
Zm00001d038343_P001	Maize	plasma membrane	71.82	65.52
GSMUA_AchrUn_...	Banana	cytosol, golgi, mitochondrion, plasma membrane	70.79	65.19
EES01758	Sorghum	mitochondrion	72.51	65.12
GSMUA_Achr3P17660_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	70.1	64.97
GSMUA_Achr10P...	Banana	cytosol, golgi, mitochondrion, plasma membrane	70.1	64.97
EES19630	Sorghum	cytosol, golgi, plasma membrane	71.13	64.89
Os05t0287800-01	Rice	mitochondrion	69.76	64.86
HORVU1Hr1G073060.1	Barley	plasma membrane	70.79	64.58
HORVU1Hr1G073040.1	Barley	plasma membrane	70.79	64.58
KXG23698	Sorghum	mitochondrion	69.07	64.22
TraesCS1B01G289300.1	Wheat	plasma membrane	70.79	63.98
Zm00001d041608_P001	Maize	mitochondrion, plasma membrane	68.73	63.9
TraesCS1D01G279500.1	Wheat	plasma membrane	70.45	63.66
Zm00001d030613_P003	Maize	mitochondrion, plasma membrane	68.38	63.58
TraesCS1A01G280400.1	Wheat	plasma membrane	70.1	63.55
Os05t0452900-02	Rice	cytosol, golgi, mitochondrion, plasma membrane	70.1	62.77
Zm00001d046198_P001	Maize	endoplasmic reticulum, plasma membrane	10.31	62.5
Zm00001d042851_P003	Maize	golgi, plasma membrane, plastid	71.48	58.59
HORVU3Hr1G085630.8	Barley	plastid	66.67	55.11

Protein Annotations

EntrezGene:100246652	wikigene:100246652	MapMan:5.4.13.1	ProteinID:CBI16030	ProteinID:CBI16030.3	UniProt:D7SK54
EMBL:FN594951	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005794	GO:GO:0005802	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0030148
GO:GO:0045140	EntrezGene:LOC100246652	wikigene:LOC100246652	PFAM:PF14360	PANTHER:PTHR21290	PANTHER:PTHR21290:SF46
InterPro:Sphingomyelin_synth-like_dom	TMHMM:TMhelix	UniParc:UPI00015C7ED5	ArrayExpress:VIT_06s0004g05800	EnsemblPlantsGene:VIT_06s0004g05800	EnsemblPlants:VIT_06s0004g05800.t01
unigene:Vvi.20279	RefSeq:XP_002280051	RefSeq:XP_002280051.1	RefSeq:XP_010650959.1	:	:

Description

No Description!

Coordinates

chr6:+:6544482..6550125

Molecular Weight (calculated)

33348.2 Da

IEP (calculated)

9.741

GRAVY (calculated)

0.346

Length

291 amino acids

Sequence
(BLAST)

001: MAFYITRRAS KVWRRICGEV ALEIPLLAQK WKLLLAGLFF QYIHGLAARG VHYLHRPGPV LQDAGFFLLP ELGQDKAYVS ETVFTFIFFS FLLWTFHPFV
101: FQSKKIYTVL LWCRVLAFLV ASQILRIITF YSTQLPGSNY HCREGSKLAR LPLPDNALEV LLINFPRGVI YGCGDLIFSS HMIFTLVFVL TYQKYGTKRC
201: IKQFSWLIAV IQSLLIIASR KHYTVDVVVA WYTVSLVVFF VDNKLPELPD RSPGTISLPL LPLSAKDEDG KNKEEHKKFP NGNSIYTVDL V

Best Arabidopsis Sequence Match ( AT3G54020.1 )
(BLAST)

001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT

Arabidopsis Description

IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.