Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, golgi
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G54020.1 | KXG26318 | AT2G23420.1 | 21798944 |
| AT3G54020.1 | OQU90665 | AT2G23420.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d038343_P001 | Maize | plasma membrane | 96.55 | 96.55 |
| Os05t0452900-02 | Rice | cytosol, golgi, mitochondrion, plasma membrane | 89.03 | 87.38 |
| HORVU1Hr1G073060.1 | Barley | plasma membrane | 82.45 | 82.45 |
| HORVU1Hr1G073040.1 | Barley | plasma membrane | 82.45 | 82.45 |
| TraesCS1A01G280400.1 | Wheat | plasma membrane | 82.76 | 82.24 |
| TraesCS1B01G289300.1 | Wheat | plasma membrane | 82.76 | 81.99 |
| TraesCS1D01G279500.1 | Wheat | plasma membrane | 82.45 | 81.68 |
| EES01758 | Sorghum | mitochondrion | 80.25 | 79.01 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 74.92 | 76.11 |
| GSMUA_Achr3P17660_001 | Banana | cytosol, golgi, mitochondrion, plasma membrane | 74.29 | 75.48 |
| GSMUA_AchrUn_... | Banana | cytosol, golgi, mitochondrion, plasma membrane | 73.98 | 74.68 |
| CDY13168 | Canola | mitochondrion, plasma membrane | 70.53 | 74.5 |
| CDX76176 | Canola | mitochondrion | 70.53 | 74.5 |
| GSMUA_Achr6P23620_001 | Banana | golgi | 73.04 | 74.44 |
| Bra014848.1-P | Field mustard | mitochondrion | 69.91 | 73.84 |
| AT3G54020.1 | Thale cress | mitochondrion, plasma membrane | 69.91 | 73.11 |
| PGSC0003DMT400049398 | Potato | plasma membrane | 64.89 | 72.63 |
| AT2G37940.1 | Thale cress | mitochondrion, plasma membrane | 68.03 | 71.15 |
| VIT_06s0004g05800.t01 | Wine grape | mitochondrion | 64.89 | 71.13 |
| KRH00099 | Soybean | golgi | 70.22 | 70.89 |
| Solyc10g086690.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 64.89 | 70.65 |
| Bra000029.1-P | Field mustard | plasma membrane | 65.52 | 70.61 |
| KRG88789 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 69.28 | 70.38 |
| VIT_08s0007g01510.t01 | Wine grape | cytosol, golgi, mitochondrion, plasma membrane | 69.59 | 70.25 |
| CDX91395 | Canola | mitochondrion, plasma membrane | 67.08 | 70.16 |
| KXG23698 | Sorghum | mitochondrion | 68.65 | 69.97 |
| CDY07761 | Canola | mitochondrion, plasma membrane | 67.4 | 69.81 |
| KRH75771 | Soybean | cytosol, golgi, mitochondrion, peroxisome | 68.65 | 69.75 |
| CDY69104 | Canola | mitochondrion, plasma membrane | 67.4 | 69.58 |
| CDY14501 | Canola | mitochondrion, plasma membrane | 67.4 | 69.58 |
| PGSC0003DMT400028621 | Potato | cytosol, golgi, plasma membrane | 67.08 | 69.26 |
| CDY18417 | Canola | plasma membrane | 66.14 | 69.18 |
| Bra017148.1-P | Field mustard | plasma membrane | 66.14 | 69.18 |
| CDX93341 | Canola | plasma membrane | 66.14 | 69.18 |
| Bra005148.1-P | Field mustard | mitochondrion, plasma membrane | 65.52 | 68.98 |
| CDX74925 | Canola | mitochondrion, plasma membrane | 66.14 | 68.95 |
| KRH49241 | Soybean | mitochondrion | 68.34 | 68.77 |
| Solyc10g084990.1.1 | Tomato | cytosol, golgi, mitochondrion, plasma membrane | 66.77 | 68.27 |
| AT2G29525.1 | Thale cress | plasma membrane | 60.5 | 66.78 |
| Solyc09g011740.2.1 | Tomato | cytosol, endoplasmic reticulum, plasma membrane | 66.14 | 66.77 |
| PGSC0003DMT400052472 | Potato | plasma membrane | 65.52 | 66.14 |
| CDY18431 | Canola | plasma membrane | 39.81 | 54.74 |
Protein Annotations
| MapMan:5.4.13.1 | EntrezGene:8072529 | UniProt:C5YZ61 | EnsemblPlants:EES19630 | ProteinID:EES19630 | ProteinID:EES19630.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006629 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0030148 | GO:GO:0045140 |
| PFAM:PF14360 | PANTHER:PTHR21290 | PANTHER:PTHR21290:SF46 | EnsemblPlantsGene:SORBI_3009G159000 | InterPro:Sphingomyelin_synth-like_dom | TMHMM:TMhelix |
| UniParc:UPI0001A8955C | RefSeq:XP_002441200.1 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:51643359..51649171
Molecular Weight (calculated)
36779.9 Da
IEP (calculated)
9.903
GRAVY (calculated)
-0.003
Length
319 amino acids
Sequence
(BLAST)
(BLAST)
001: MYIARETSKV WRKVTTEISV ELQLLRDKWG LLLAGLIFQY IHGLAARGVH YLHRPGPLLQ DLGFMALPEL GQDKGYLSES IFSSIFISFV LWTFHPFIYH
101: SKRFYTVLIW RRVLAFLVAS QFLRIITFYS TQLPGPNYHC REGSKLATLP PPNSVLEVLL INFPRGVLYG CGDLIFSSHM IFTLVFVRTY HKYGSKRFIK
201: FLAWFMAIIQ SLLIIASRKH YSVDVVVAWY TVNLVVFFVD NKLPEMPDRT SGLPLLPLSS KDKEARQKEE KDSKLKDEFH KLLNGNHVDA TDRRQRAQMN
301: GRHDEDINHA LSEATANGT
101: SKRFYTVLIW RRVLAFLVAS QFLRIITFYS TQLPGPNYHC REGSKLATLP PPNSVLEVLL INFPRGVLYG CGDLIFSSHM IFTLVFVRTY HKYGSKRFIK
201: FLAWFMAIIQ SLLIIASRKH YSVDVVVAWY TVNLVVFFVD NKLPEMPDRT SGLPLLPLSS KDKEARQKEE KDSKLKDEFH KLLNGNHVDA TDRRQRAQMN
301: GRHDEDINHA LSEATANGT
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [plasma membrane,mitochondrion]
SUBAcon: [plasma membrane,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.