Skip to main content
crop-pal logo
Field mustard
Search for another protein from :
Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • nucleus 1
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • mitochondrion 2
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
MultiLoc:golgi
Plant-mPloc:plasma membrane
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra006619.1-P
Bra012567.1-P
Bra013361.1-P
Bra020182.1-P
Bra039198.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54020.1 Bra039198.1-P AT2G23420.1 21798944
AT3G54020.1 Bra012567.1-P AT4G19030.1 21798944
AT3G54020.1 Bra013361.1-P AT4G19030.1 21798944
AT3G54020.1 Bra002403.1-P AT5G22290.1 21798944
AT3G54020.1 Bra006619.1-P AT5G22290.1 21798944
AT3G54020.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX76176 Canola mitochondrion 99.01 99.01
AT3G54020.1 Thale cress mitochondrion, plasma membrane 91.72 90.82
Bra005148.1-P Field mustard mitochondrion, plasma membrane 84.77 84.49
Bra017148.1-P Field mustard plasma membrane 85.1 84.26
Bra000029.1-P Field mustard plasma membrane 80.79 82.43
KRG88789 Soybean cytosol, golgi, mitochondrion, plasma membrane 79.8 76.75
VIT_08s0007g01510.t01 Wine grape cytosol, golgi, mitochondrion, plasma membrane 80.13 76.58
KRH75771 Soybean cytosol, golgi, mitochondrion, peroxisome 79.14 76.11
KRH00099 Soybean golgi 79.14 75.63
PGSC0003DMT400028621 Potato cytosol, golgi, plasma membrane 77.15 75.4
PGSC0003DMT400049398 Potato plasma membrane 70.86 75.09
Solyc10g084990.1.1 Tomato cytosol, golgi, mitochondrion, plasma membrane 76.82 74.36
KRH49241 Soybean mitochondrion 77.81 74.13
Solyc10g086690.1.1 Tomato cytosol, golgi, mitochondrion, plasma membrane 70.53 72.7
Solyc09g011740.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 74.5 71.2
PGSC0003DMT400052472 Potato plasma membrane 74.17 70.89
Zm00001d046198_P001 Maize endoplasmic reticulum, plasma membrane 11.26 70.83
GSMUA_Achr10P... Banana cytosol, golgi, mitochondrion, plasma membrane 72.85 70.06
GSMUA_AchrUn_... Banana cytosol, golgi, mitochondrion, plasma membrane 73.18 69.94
EES19630 Sorghum cytosol, golgi, plasma membrane 73.84 69.91
Zm00001d038343_P001 Maize plasma membrane 73.18 69.28
GSMUA_Achr6P23620_001 Banana golgi 71.52 69.01
GSMUA_Achr3P17660_001 Banana cytosol, golgi, mitochondrion, plasma membrane 71.52 68.79
Os01t0850100-01 Rice cytosol, golgi, mitochondrion, plasma membrane 73.51 68.1
HORVU1Hr1G073040.1 Barley plasma membrane 71.52 67.71
HORVU1Hr1G073060.1 Barley plasma membrane 71.52 67.71
TraesCS3A01G365000.1 Wheat plasma membrane 72.52 67.18
Os05t0287800-01 Rice mitochondrion 69.54 67.09
Zm00001d041608_P001 Maize mitochondrion, plasma membrane 69.54 67.09
TraesCS3B01G396900.1 Wheat golgi 72.19 66.87
KXG23698 Sorghum mitochondrion 69.21 66.77
TraesCS3D01G358200.1 Wheat golgi 71.85 66.56
Os05t0452900-02 Rice cytosol, golgi, mitochondrion, plasma membrane 71.52 66.46
TraesCS1D01G279500.1 Wheat plasma membrane 70.86 66.46
TraesCS1B01G289300.1 Wheat plasma membrane 70.53 66.15
Zm00001d030613_P003 Maize mitochondrion, plasma membrane 68.21 65.81
TraesCS1A01G280400.1 Wheat plasma membrane 69.87 65.73
EES01758 Sorghum mitochondrion 70.2 65.43
Zm00001d012380_P002 Maize plasma membrane 69.21 64.51
Zm00001d042851_P003 Maize golgi, plasma membrane, plastid 69.21 58.87
HORVU3Hr1G085630.8 Barley plastid 66.23 56.82
Protein Annotations
MapMan:5.4.13.1EnsemblPlantsGene:Bra014848EnsemblPlants:Bra014848.1EnsemblPlants:Bra014848.1-PGO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0006629GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0030148GO:GO:0045140UniProt:M4DEC7
PFAM:PF14360PANTHER:PTHR21290PANTHER:PTHR21290:SF33InterPro:Sphingomyelin_synth-like_domTMHMM:TMhelixUniParc:UPI00025450AE
SEG:seg:::::
Description
AT3G54020 (E=1e-157) | phosphatidic acid phosphatase-related / PAP2-related
Coordinates
chrA04:-:3581370..3583408
Molecular Weight (calculated)
34363.3 Da
IEP (calculated)
9.520
GRAVY (calculated)
0.218
Length
302 amino acids
Sequence
(BLAST)
001: MTLYIRREAS KLWKRVCSEI ATEIGLLADN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDLGYILLP ELGQDKSYIS ETVFTCVFLS FVLWTFHPFI
101: IKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHSVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVL TYQKYGSKSF
201: IKMLGWIIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTVLLPVSS KDRTKEENHK LLNGTGVDPA DRRPRAQVNG NVGHTDNATN
301: GA
Best Arabidopsis Sequence Match ( AT3G54020.1 )
(BLAST)
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.