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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • plasma membrane 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400010254
PGSC0003DMT400015077
PGSC0003DMT400050482
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54020.1 PGSC0003DMT400010254 AT2G23420.1 21798944
AT3G54020.1 PGSC0003DMT400071510 AT4G19030.1 21798944
AT3G54020.1 PGSC0003DMT400073246 AT4G19030.1 21798944
AT3G54020.1 PGSC0003DMT400015077 AT5G22290.1 21798944
AT3G54020.1 PGSC0003DMT400050482 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc09g011740.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 97.47 97.47
PGSC0003DMT400049398 Potato plasma membrane 75.32 83.51
PGSC0003DMT400028621 Potato cytosol, golgi, plasma membrane 81.65 83.5
KRH75771 Soybean cytosol, golgi, mitochondrion, peroxisome 76.9 77.39
KRG88789 Soybean cytosol, golgi, mitochondrion, plasma membrane 76.58 77.07
VIT_08s0007g01510.t01 Wine grape cytosol, golgi, mitochondrion, plasma membrane 76.58 76.58
Bra017148.1-P Field mustard plasma membrane 72.78 75.41
AT2G37940.1 Thale cress mitochondrion, plasma membrane 72.78 75.41
CDY18417 Canola plasma membrane 72.78 75.41
AT3G54020.1 Thale cress mitochondrion, plasma membrane 72.47 75.08
CDX93341 Canola plasma membrane 72.47 75.08
CDY13168 Canola mitochondrion, plasma membrane 71.52 74.83
CDX76176 Canola mitochondrion 71.52 74.83
CDX91395 Canola mitochondrion, plasma membrane 72.15 74.75
CDY07761 Canola mitochondrion, plasma membrane 72.47 74.35
CDX74925 Canola mitochondrion, plasma membrane 71.84 74.18
Bra014848.1-P Field mustard mitochondrion 70.89 74.17
Bra000029.1-P Field mustard plasma membrane 68.99 73.65
Bra005148.1-P Field mustard mitochondrion, plasma membrane 70.57 73.6
CDY14501 Canola mitochondrion, plasma membrane 71.84 73.46
CDY69104 Canola mitochondrion, plasma membrane 71.84 73.46
KRH00099 Soybean golgi 73.42 73.42
KRH49241 Soybean mitochondrion 72.47 72.24
Zm00001d046198_P001 Maize endoplasmic reticulum, plasma membrane 10.76 70.83
TraesCS3A01G365000.1 Wheat plasma membrane 68.04 65.95
TraesCS3B01G396900.1 Wheat golgi 67.72 65.64
EES19630 Sorghum cytosol, golgi, plasma membrane 66.14 65.52
Zm00001d038343_P001 Maize plasma membrane 66.14 65.52
Os01t0850100-01 Rice cytosol, golgi, mitochondrion, plasma membrane 67.41 65.34
TraesCS3D01G358200.1 Wheat golgi 67.41 65.34
EES01758 Sorghum mitochondrion 66.46 64.81
GSMUA_AchrUn_... Banana cytosol, golgi, mitochondrion, plasma membrane 64.56 64.56
GSMUA_Achr6P23620_001 Banana golgi 63.92 64.54
HORVU1Hr1G073060.1 Barley plasma membrane 64.87 64.26
HORVU1Hr1G073040.1 Barley plasma membrane 64.87 64.26
Os05t0287800-01 Rice mitochondrion 63.61 64.22
GSMUA_Achr10P... Banana cytosol, golgi, mitochondrion, plasma membrane 63.61 64.01
Zm00001d012380_P002 Maize plasma membrane 65.51 63.89
KXG23698 Sorghum mitochondrion 62.97 63.58
GSMUA_Achr3P17660_001 Banana cytosol, golgi, mitochondrion, plasma membrane 62.97 63.38
TraesCS1D01G279500.1 Wheat plasma membrane 64.24 63.04
Zm00001d041608_P001 Maize mitochondrion, plasma membrane 62.34 62.94
Os05t0452900-02 Rice cytosol, golgi, mitochondrion, plasma membrane 64.56 62.77
TraesCS1B01G289300.1 Wheat plasma membrane 63.92 62.73
Zm00001d030613_P003 Maize mitochondrion, plasma membrane 62.03 62.62
TraesCS1A01G280400.1 Wheat plasma membrane 63.29 62.31
CDY18431 Canola plasma membrane 43.04 58.62
Zm00001d042851_P003 Maize golgi, plasma membrane, plastid 65.82 58.59
HORVU3Hr1G085630.8 Barley plastid 63.29 56.82
Protein Annotations
EnsemblPlants:PGSC0003DMT400052472EnsemblPlantsGene:PGSC0003DMG400020365EntrezGene:102591979GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Sphingomyelin_synth-like_domPANTHER:PTHR21290PANTHER:PTHR21290:SF46PFAM:PF14360PGSC:PGSC0003DMG400020365RefSeq:XP_006363096.1
TMHMM:TMhelixUniParc:UPI000295E7D7UniProt:M1BTG8MapMan:5.4.13.1::
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400020365]
Coordinates
chr9:-:791115..795384
Molecular Weight (calculated)
36131.3 Da
IEP (calculated)
9.253
GRAVY (calculated)
0.169
Length
316 amino acids
Sequence
(BLAST)
001: MALVGTDKDM SFYIGREASK LWKRFCAEIT TEINLLADNW KYLLGGFICQ YIHGLAARGV HYFHRPGPIL QDVGFYLLPE LGQDRAYISE TVFTTIFLSF
101: IMWTFHPFIF KTKKIYTVLI WCRVLAFLVG CQFLRIITFY STQLPGPNYH CREGSKLATL PPPDNILQAL LIVPRGMLYG CGDLIFSSHM IFSIVFVRTY
201: QKYGTRRFIK QCAWLAVIAQ SFLIIASRKH YTVDVVVAWY TVNLVVFFID KTLPELPDRT SALLLPVTKD SKSKEENHKL LNGNSGDPAE WRPRTQINGK
301: IVEDGKTVHE AVINGV
Best Arabidopsis Sequence Match ( AT2G37940.2 )
(BLAST)
001: MTLYIRRESS KLWKRFCSEI STEIGLLAEN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI
101: LKTKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH MIFTLVFVRT YQKYGTKRFI
201: KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN
301: TMNGA
Arabidopsis Description
IPCS2ERH1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV03]
SUBAcon: [plasma membrane,mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.