CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	golgi
Predotar:	mitochondrion
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY18417	Canola	plasma membrane	99.67	99.67
Bra017148.1-P	Field mustard	plasma membrane	99.34	99.34
CDX91395	Canola	mitochondrion, plasma membrane	96.07	96.07
CDX74925	Canola	mitochondrion, plasma membrane	96.07	95.75
AT2G37940.1	Thale cress	mitochondrion, plasma membrane	94.75	94.75
CDY14501	Canola	mitochondrion, plasma membrane	95.74	94.5
CDY69104	Canola	mitochondrion, plasma membrane	95.74	94.5
CDY07761	Canola	mitochondrion, plasma membrane	95.41	94.48
CDX76176	Canola	mitochondrion	84.92	85.76
CDY13168	Canola	mitochondrion, plasma membrane	84.92	85.76
KRG88789	Soybean	cytosol, golgi, mitochondrion, plasma membrane	78.36	76.11
CDY18431	Canola	plasma membrane	57.38	75.43
KRH75771	Soybean	cytosol, golgi, mitochondrion, peroxisome	77.38	75.16
VIT_08s0007g01510.t01	Wine grape	cytosol, golgi, mitochondrion, plasma membrane	77.38	74.68
KRH00099	Soybean	golgi	76.72	74.05
PGSC0003DMT400049398	Potato	plasma membrane	68.2	72.98
Zm00001d046198_P001	Maize	endoplasmic reticulum, plasma membrane	11.48	72.92
KRH49241	Soybean	mitochondrion	75.74	72.87
Solyc09g011740.2.1	Tomato	cytosol, endoplasmic reticulum, plasma membrane	75.41	72.78
PGSC0003DMT400028621	Potato	cytosol, golgi, plasma membrane	73.44	72.49
PGSC0003DMT400052472	Potato	plasma membrane	75.08	72.47
Solyc10g084990.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	72.46	70.83
Solyc10g086690.1.1	Tomato	cytosol, golgi, mitochondrion, plasma membrane	67.54	70.31
GSMUA_Achr3P17660_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	70.49	68.47
GSMUA_Achr6P23620_001	Banana	golgi	69.18	67.41
GSMUA_AchrUn_...	Banana	cytosol, golgi, mitochondrion, plasma membrane	69.18	66.77
GSMUA_Achr10P...	Banana	cytosol, golgi, mitochondrion, plasma membrane	68.52	66.56
EES19630	Sorghum	cytosol, golgi, plasma membrane	69.18	66.14
Zm00001d038343_P001	Maize	plasma membrane	69.18	66.14
HORVU1Hr1G073040.1	Barley	plasma membrane	69.18	66.14
HORVU1Hr1G073060.1	Barley	plasma membrane	69.18	66.14
TraesCS3A01G365000.1	Wheat	plasma membrane	69.84	65.34
TraesCS3B01G396900.1	Wheat	golgi	69.84	65.34
TraesCS3D01G358200.1	Wheat	golgi	69.51	65.03
Os01t0850100-01	Rice	cytosol, golgi, mitochondrion, plasma membrane	69.51	65.03
TraesCS1D01G279500.1	Wheat	plasma membrane	68.52	64.91
EES01758	Sorghum	mitochondrion	68.85	64.81
TraesCS1B01G289300.1	Wheat	plasma membrane	68.2	64.6
Os05t0287800-01	Rice	mitochondrion	66.23	64.54
Os05t0452900-02	Rice	cytosol, golgi, mitochondrion, plasma membrane	68.52	64.31
Zm00001d041608_P001	Maize	mitochondrion, plasma membrane	65.9	64.22
KXG23698	Sorghum	mitochondrion	65.57	63.9
Zm00001d030613_P003	Maize	mitochondrion, plasma membrane	65.57	63.9
TraesCS1A01G280400.1	Wheat	plasma membrane	67.21	63.86
Zm00001d012380_P002	Maize	plasma membrane	67.54	63.58
Zm00001d042851_P003	Maize	golgi, plasma membrane, plastid	68.85	59.15
HORVU3Hr1G085630.8	Barley	plastid	64.59	55.97

Protein Annotations

EnsemblPlants:CDX93341	EnsemblPlantsGene:GSBRNA2T00155320001	GO:A0A078DVN7	InterPro:Sphingomyelin_synth-like_dom	PANTHER:PTHR21290	PANTHER:PTHR21290:SF33
PFAM:PF14360	ProteinID:CDX93341	ProteinID:CDX93341.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EC7A14
MapMan:5.4.13.1	:	:	:	:	:

Description

BnaC04g45550D

Coordinates

chrLK031875:-:1174662..1177325

Molecular Weight (calculated)

35013.9 Da

IEP (calculated)

9.527

GRAVY (calculated)

0.115

Length

305 amino acids

Sequence
(BLAST)

001: MTLYIRRESS KLWKRFCSEI TTEIGLLAEN WKYLVAGIIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFVS FFLWTFHPFI
101: LKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVAR MPWPKNPLEV LEINPHGVMY GCGDLIFSSH MIFTLVFVLT YQKYGTKRFI
201: KLFGWLTAFV QSLLIIASRK HYTVDVVVAW YTVNLVVFCL DKKLPELPDR TTVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHSDN
301: SINGA

Best Arabidopsis Sequence Match ( AT2G37940.2 )
(BLAST)

001: MTLYIRRESS KLWKRFCSEI STEIGLLAEN WKYLLAGLIC QYIHGLAAKG VHYIHRPGPT LQDLGFFLLP ELGQERSYIS ETVFTSVFLS FFLWTFHPFI
101: LKTKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSKVSR LPWPKSALEV LEINPHGVMY GCGDLIFSSH MIFTLVFVRT YQKYGTKRFI
201: KLFGWLTAIV QSLLIIASRK HYSVDVVVAW YTVNLVVFCL DKKLPELPDR TAVLLPVISK DRTKEENHKL LNGNGVDPAD WRPRAQVNGK IDSNGVHTDN
301: TMNGA

Arabidopsis Description

IPCS2ERH1 [Source:UniProtKB/TrEMBL;Acc:A0A178VV03]
SUBAcon: [mitochondrion,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.