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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane, golgi, cytosol

Predictor Summary:
  • plastid 1
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • mitochondrion 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, golgi, mitochondrion, plasma membrane
Any Predictor:cytosol, mitochondrion, plastid, secretory
BaCelLo:plastid
MultiLoc:golgi
Plant-mPloc:plasma membrane
Predotar:mitochondrion
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc02g071920.2.1
Solyc02g093290.2.1
Solyc03g005980.2.1
Solyc03g044430.2.1
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54020.1 Solyc02g093290.2.1 AT2G23420.1 21798944
AT3G54020.1 Solyc03g044430.2.1 AT2G23420.1 21798944
AT3G54020.1 Solyc02g071920.2.1 AT4G19030.1 21798944
AT3G54020.1 Solyc03g005980.2.1 AT4G19030.1 21798944
AT3G54020.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT3G54020.1 Solyc11g068750.1.1 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400028621 Potato cytosol, golgi, plasma membrane 95.83 96.76
Solyc10g086690.1.1 Tomato cytosol, golgi, mitochondrion, plasma membrane 77.24 82.25
Solyc09g011740.2.1 Tomato cytosol, endoplasmic reticulum, plasma membrane 82.69 81.65
KRG88789 Soybean cytosol, golgi, mitochondrion, plasma membrane 80.13 79.62
KRH75771 Soybean cytosol, golgi, mitochondrion, peroxisome 80.13 79.62
VIT_08s0007g01510.t01 Wine grape cytosol, golgi, mitochondrion, plasma membrane 80.45 79.43
CDX76176 Canola mitochondrion 75.0 77.48
CDY13168 Canola mitochondrion, plasma membrane 74.68 77.15
Bra014848.1-P Field mustard mitochondrion 74.36 76.82
AT3G54020.1 Thale cress mitochondrion, plasma membrane 74.68 76.39
KRH00099 Soybean golgi 76.92 75.95
KRH49241 Soybean mitochondrion 76.6 75.39
AT2G37940.1 Thale cress mitochondrion, plasma membrane 72.44 74.1
CDX91395 Canola mitochondrion, plasma membrane 71.79 73.44
CDX74925 Canola mitochondrion, plasma membrane 71.79 73.2
Bra000029.1-P Field mustard plasma membrane 69.23 72.97
CDY14501 Canola mitochondrion, plasma membrane 72.12 72.82
CDY69104 Canola mitochondrion, plasma membrane 72.12 72.82
CDY18417 Canola plasma membrane 71.15 72.79
Bra017148.1-P Field mustard plasma membrane 71.15 72.79
CDY07761 Canola mitochondrion, plasma membrane 71.79 72.73
Bra005148.1-P Field mustard mitochondrion, plasma membrane 70.51 72.61
CDX93341 Canola plasma membrane 70.83 72.46
Zm00001d046198_P001 Maize endoplasmic reticulum, plasma membrane 10.9 70.83
GSMUA_Achr6P23620_001 Banana golgi 69.55 69.33
GSMUA_AchrUn_... Banana cytosol, golgi, mitochondrion, plasma membrane 69.87 68.99
Zm00001d038343_P001 Maize plasma membrane 69.23 67.71
GSMUA_Achr10P... Banana cytosol, golgi, mitochondrion, plasma membrane 67.63 67.2
Os05t0287800-01 Rice mitochondrion 66.99 66.77
EES19630 Sorghum cytosol, golgi, plasma membrane 68.27 66.77
TraesCS3B01G396900.1 Wheat golgi 69.23 66.26
GSMUA_Achr3P17660_001 Banana cytosol, golgi, mitochondrion, plasma membrane 66.67 66.24
TraesCS3A01G365000.1 Wheat plasma membrane 68.91 65.95
Os01t0850100-01 Rice cytosol, golgi, mitochondrion, plasma membrane 68.59 65.64
TraesCS3D01G358200.1 Wheat golgi 68.59 65.64
KXG23698 Sorghum mitochondrion 65.71 65.5
EES01758 Sorghum mitochondrion 67.95 65.43
Zm00001d041608_P001 Maize mitochondrion, plasma membrane 65.06 64.86
Zm00001d030613_P003 Maize mitochondrion, plasma membrane 65.06 64.86
HORVU1Hr1G073040.1 Barley plasma membrane 66.03 64.58
HORVU1Hr1G073060.1 Barley plasma membrane 66.03 64.58
Os05t0452900-02 Rice cytosol, golgi, mitochondrion, plasma membrane 66.99 64.31
Zm00001d012380_P002 Maize plasma membrane 66.35 63.89
TraesCS1B01G289300.1 Wheat plasma membrane 65.71 63.66
TraesCS1D01G279500.1 Wheat plasma membrane 65.38 63.35
TraesCS1A01G280400.1 Wheat plasma membrane 64.42 62.62
Zm00001d042851_P003 Maize golgi, plasma membrane, plastid 66.99 58.87
CDY18431 Canola plasma membrane 42.95 57.76
HORVU3Hr1G085630.8 Barley plastid 63.14 55.97
Protein Annotations
MapMan:5.4.13.1GO:GO:0003674GO:GO:0003824GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005794GO:GO:0005802GO:GO:0006629GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0016740GO:GO:0030148
GO:GO:0045140UniProt:K4D3T3PFAM:PF14360PANTHER:PTHR21290PANTHER:PTHR21290:SF33EnsemblPlantsGene:Solyc10g084990.1
EnsemblPlants:Solyc10g084990.1.1InterPro:Sphingomyelin_synth-like_domTMHMM:TMhelixUniParc:UPI000276A5A3::
Description
No Description!
Coordinates
chr10:+:64336919..64340273
Molecular Weight (calculated)
35752.6 Da
IEP (calculated)
9.224
GRAVY (calculated)
0.122
Length
312 amino acids
Sequence
(BLAST)
001: MSFYIGREAP KLWRRICAEA TIEINLLAEN WKYILGGLIF QYIHGLGARG VHYLHRPGPT LQDAGYFLLP ELGSDNAYIS ETVFTTIFLS FVLWTFHPFI
101: FKTKKIYTVL MWCRVLAFLV ACQFLRMITF YSTQLPGPNY HCREGSKLAT LPRPDSVLEV LLLNFPRGLL YGCGDLIFSS HMIFSLVFVR TYQKYGTRRF
201: IKQCAWIAVI AQSFLIVASR KHYTVDVVVA WYTVNLVVFF VDKKLSELPD RSSAASLLPV SKDSKTKEEN HKLLNGNTDP EDWRPRTQIN GMIMEDGNAV
301: HVEAAVNGVY RQ
Best Arabidopsis Sequence Match ( AT3G54020.1 )
(BLAST)
001: MTLYIRREAS KLWRRFCSEI TTEIGLLAEN WKYLLAGLLC QYIHGLAARG VHYIHRPGPT LQDSGFFVLP ELGQDKGFIS ETVFTCVFLS FFLWTFHPFI
101: VKSKKIYTVL IWCRVLAFLV ACQFLRVITF YSTQLPGPNY HCREGSELAR LPRPHNVLEV LLLNFPRGVI YGCGDLIFSS HMIFTLVFVR TYQKYGSKRF
201: IKLLGWVIAI LQSLLIIASR KHYTVDVVVA WYTVNLVVFF LDKKLPELPD RTTALLPVIS KDRTKEESHK LLNGNGVDPA DRRPRAQVNG KDSNGGHTDN
301: ATNGT
Arabidopsis Description
IPCS1Phosphatidylinositol:ceramide inositolphosphotransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M325]
SUBAcon: [mitochondrion,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.