Factsheet for Solyc02g093290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 22364583
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g005970.2.1
Solyc01g022740.2.1
Solyc01g056940.2.1
Solyc01g104840.2.1
Solyc01g107300.2.1
Solyc01g107310.2.1
Solyc01g108430.2.1
Solyc02g081960.2.1
Solyc03g083520.2.1
Solyc04g005690.2.1
Solyc05g054710.2.1
Solyc08g068350.2.1
Solyc08g083360.2.1
Solyc10g047130.1.1
Solyc10g049630.1.1
Solyc11g065240.1.1
Solyc11g072270.1.1
Solyc12g098940.1.1
Solyc12g099030.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G23420.1	Solyc03g083520.2.1	AT1G12310.1	21798944
AT2G23420.1	Solyc11g072270.1.1	AT1G12310.1	21798944
AT2G23420.1	Solyc02g081960.2.1	AT1G14640.1	21798944
AT2G23420.1	Solyc04g005690.2.1	AT1G14640.1	21798944
AT2G23420.1	Solyc01g108430.2.1	AT1G49590.1	21798944
AT2G23420.1	Solyc11g065240.1.1	AT1G50450.1	21798944
AT2G23420.1	Solyc01g005970.2.1	AT1G55270.1	21798944
AT2G23420.1	Solyc01g022740.2.1	AT1G55270.1	21798944
AT2G23420.1	Solyc08g083360.2.1	AT3G16250.1	21798944
AT2G23420.1	Solyc01g104840.2.1	AT3G26420.1	21798944
AT2G23420.1	Solyc10g047130.1.1	AT3G26420.1	21798944
AT2G23420.1	Solyc05g054710.2.1	AT3G55260.1	21798944
AT2G23420.1	Solyc01g056940.2.1	AT3G62250.1	21798944
AT2G23420.1	Solyc12g098940.1.1	AT3G62250.1	21798944
AT2G23420.1	Solyc12g099030.1.1	AT3G62250.1	21798944
AT2G23420.1	Solyc08g068350.2.1	AT4G32750.1	21798944
AT2G23420.1	Solyc01g107300.2.1	AT4G33920.1	21798944
AT2G23420.1	Solyc01g107310.2.1	AT4G33920.1	21798944
AT2G23420.1	Solyc10g049630.1.1	AT4G33920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010254	Potato	cytosol	98.39	98.39
KRH04597	Soybean	cytosol	64.87	85.38
Solyc03g044430.2.1	Tomato	cytosol	86.56	85.34
GSMUA_Achr2P08220_001	Banana	cytosol	80.47	83.77
KRH57934	Soybean	cytosol, nucleus	82.97	83.12
VIT_07s0031g00460.t01	Wine grape	cytosol	83.51	83.07
GSMUA_Achr11P...	Banana	cytosol	76.34	82.24
Bra039198.1-P	Field mustard	cytosol	80.11	80.4
CDY46076	Canola	cytosol	80.11	80.4
CDY63965	Canola	cytosol	74.91	80.38
AT4G36940.1	Thale cress	cytosol	80.47	80.32
Zm00001d034777_P005	Maize	cytosol	80.11	80.25
CDY66512	Canola	cytosol	79.75	80.04
AT2G23420.1	Thale cress	cytosol	79.75	79.89
Bra017808.1-P	Field mustard	cytosol	75.27	79.85
CDY29537	Canola	cytosol	79.93	79.36
OQU90665	Sorghum	peroxisome	80.47	79.33
Os03t0837300-02	Rice	plasma membrane	78.85	78.57
Zm00001d003674_P001	Maize	extracellular	37.99	78.52
KRH77015	Soybean	cytosol	76.7	76.7
TraesCS4A01G354500.1	Wheat	peroxisome	79.21	76.6
Os04t0429800-01	Rice	plasma membrane, plastid	77.24	76.55
TraesCS5B01G517900.3	Wheat	peroxisome	79.03	76.43
KXG26318	Sorghum	cytosol, plastid	77.96	76.32
TraesCS5D01G517600.1	Wheat	peroxisome	78.85	76.26
TraesCS2B01G318300.2	Wheat	cytosol, peroxisome, plastid	76.88	75.8
TraesCS2D01G301100.1	Wheat	golgi	76.88	75.8
TraesCS2A01G302400.1	Wheat	cytosol, peroxisome, plastid	76.7	75.62
Zm00001d003675_P001	Maize	plastid	28.14	70.4
KRH63322	Soybean	extracellular	10.22	68.67
Zm00001d025412_P001	Maize	plastid	77.24	66.93
KRH28456	Soybean	extracellular	20.43	60.32
HORVU2Hr1G074990.1	Barley	plastid	4.66	24.76

Protein Annotations

KEGG:00760+6.3.4.21	Gene3D:3.20.140.10	Gene3D:3.20.20.70	MapMan:7.9.2.2	InterPro:Aldolase_TIM	GO:GO:0003674
GO:GO:0003824	GO:GO:0004514	GO:GO:0004516	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009435	GO:GO:0009987	GO:GO:0016740	GO:GO:0019358	InterPro:IPR013785
UniProt:K4BDC5	InterPro:Nic_PRibTrfase-Fam	InterPro:Nic_PRibTrfase_pncB	InterPro:Nicotinate_pribotase_like_C	PIRSF:PIRSF000484	PANTHER:PTHR11098
PANTHER:PTHR11098:SF17	SUPFAM:SSF51690	SUPFAM:SSF54675	EnsemblPlantsGene:Solyc02g093290.2	EnsemblPlants:Solyc02g093290.2.1	TIGRFAMs:TIGR01513
UniParc:UPI00027684F2	:	:	:	:	:

Description

No Description!

Coordinates

chr2:+:54193374..54201523

Molecular Weight (calculated)

62274.6 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.116

Length

558 amino acids

Sequence
(BLAST)

001: MAETIPNGGP ESANIDGPTN PMVTPILTDL YQFTMAYAYW KAGKHNERAV FDLYFRRNPF GGEYTIFAGL EECIKFIANF KFTEDEIAFI RSSLPSSCED
101: GFFEYLRRLD CSDIEIYSIS EGSVVFPKVP LMRIEGPVAV VQLLETPFVN LINYASLVTT NAARHRFVAG RSKILLEFGL RRAQGPDGGI SASKYCYMGG
201: FDATSNVAAG KLFGIPLRGT HSHAFVSSFL SPDEIIEKSL QHHNGSSVCE DFVSLVQTWL DKLKWSHLLG GIFSETNQSE LAAFASYALA FPGSFLALVD
301: TYDVMRSGLP NFCAVALALN DLGYKAVGIR LDSGDLAYQS CEARKFFCAI EKEFGLPGFA KTSITASNDL NEETLDALNK QGHEVDAFGI GTHLVTCYAQ
401: AALGVVFKLV EINNQPRIKL SEDVSKVSIP CKKRCYRLYG KEGYPLVDIM TGENEPHPKV GERILCRHPF SESKRAYVVP QRVEELLKCF WPGKSAKTRE
501: DLPPLKEIRE RCIAQLDQMR PDHMRRLNPT PYKVSVSAKL YDFIHFLWLN EAPVGELQ

Best Arabidopsis Sequence Match ( AT2G23420.1 )
(BLAST)

001: MEPKENGSEL GQKIIDGPTN PMVTPLLNDL YQFTMAYAYW KAGKHNERSV FDLYFRKNPF GGEYTVFAGL EECVKFLANF KLTDEEIDFV QECLPGSEEA
101: FCDYLRGLDC SDVEVYAIPE GSVVFPKVPL MRVEGPVGVV QLLETPFLNL VNFASLVATN AARHRFVAGK SKSLLEFGAR RAQGPDGAIS ASKYCYLGGF
201: DATSNVAAGK LFGIPLRGTH SHAYVSSFMS TDEIVDKVLR SADGKTTCED FVSHVQTWLK KIQYSPSLSG IFSETNQSEL AAFTSYALAF PKTFLALVDT
301: YDVMKSGIPN FCAVALALND FGYKALGIRL DSGDLAYLSR EARNFFCTVE RELKVPGFGK MVVTASNDLN EETIDALNKQ GHEVDAFGIG TYLVTCYSQA
401: ALGCVFKLVE INNQPRIKLS EDVTKVSIPC KKRSYRLYGK EGYPLVDIMT GENEPPPKVG ERLLCRHPFN ESKRAYVVPQ RVEELLKCYW RGSADEAREV
501: LPPLKEIRDR CIKQLENMRP DHMRRLNPTP YKVSVSAKLY DFIHFLWLNE APVGELQ

Arabidopsis Description

NAPRT2Nicotinate phosphoribosyltransferase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84WV8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.