Factsheet for Solyc12g099030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
endoplasmic reticulum 3
nucleus 1
extracellular 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

plastid: 22908117
nucleus: 25464976

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT1G23410.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT1G23410.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT2G47110.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G47110.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G47110.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G62250.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT3G62250.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT3G62250.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098940.1.1	Tomato	cytosol, nucleus	82.11	100.0
Solyc01g056940.2.1	Tomato	nucleus	80.53	98.08
KRH11776	Soybean	nucleus	79.47	97.42
GSMUA_Achr8P22260_001	Banana	cytosol	80.0	96.82
GSMUA_Achr3P08430_001	Banana	cytosol	80.0	96.82
KRH74571	Soybean	cytosol	78.95	96.77
KRH69588	Soybean	nucleus	78.95	96.77
KRH36782	Soybean	nucleus	78.42	96.13
CDX83344	Canola	cytosol	78.95	95.54
GSMUA_AchrUn_...	Banana	cytosol	78.95	95.54
CDY50916	Canola	cytosol	78.95	95.54
TraesCS1D01G405400.1	Wheat	cytosol	77.89	95.48
TraesCS1B01G425700.1	Wheat	cytosol	77.89	95.48
TraesCS1A01G397400.1	Wheat	cytosol	77.89	95.48
AT2G47110.1	Thale cress	cytosol	78.42	94.9
CDY66301	Canola	cytosol	78.42	94.9
CDX76623	Canola	cytosol	78.42	94.9
CDX67885	Canola	cytosol	78.42	94.9
CDY25100	Canola	cytosol	78.42	94.9
CDY11410	Canola	cytosol	78.42	94.9
CDX93983	Canola	cytosol	78.42	94.9
EES17768	Sorghum	cytosol	77.37	94.84
TraesCS1A01G105400.1	Wheat	cytosol	77.37	94.84
TraesCS1A01G397500.1	Wheat	golgi, unclear	77.37	94.84
TraesCS1B01G130900.1	Wheat	cytosol	77.37	94.84
TraesCS1D01G109800.1	Wheat	cytosol	77.37	94.84
Os05t0160200-01	Rice	nucleus	77.37	94.84
Os01t0328400-01	Rice	nucleus	77.37	94.84
EES02888	Sorghum	cytosol	77.37	94.84
AT3G62250.1	Thale cress	cytosol	77.89	94.27
CDY12472	Canola	cytosol	74.74	91.03
CDY25783	Canola	cytosol	74.74	91.03
CDY44146	Canola	cytosol	74.74	91.03
CDY04715	Canola	cytosol	74.21	90.38
AT1G23410.1	Thale cress	cytosol	74.21	90.38
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	84.21	85.56
HORVU1Hr1G023660.1	Barley	extracellular	78.42	83.24
Solyc01g096290.2.1	Tomato	cytosol	44.21	65.62
Solyc03g082570.2.1	Tomato	cytosol	44.21	65.62
Solyc08g083120.2.1	Tomato	cytosol, nucleus	44.21	65.62
Solyc08g008590.2.1	Tomato	cytosol, nucleus	43.68	61.03
Solyc10g005560.2.1	Tomato	cytosol, nucleus	45.79	56.49
Zm00001d032616_P001	Maize	plastid	44.21	53.85
Solyc11g005650.1.1	Tomato	plasma membrane	30.53	51.33
Solyc06g053210.2.1	Tomato	cytosol	43.16	43.62
HORVU1Hr1G087690.8	Barley	nucleus	60.53	42.91
Solyc11g005640.1.1	Tomato	cytosol	38.42	32.88
Solyc10g006480.1.1	Tomato	cytosol, extracellular, nucleus, unclear	50.53	21.01
Solyc07g064130.1.1	Tomato	nucleus	50.53	21.01
Solyc11g005670.1.1	Tomato	cytosol, nucleus	50.53	17.98
Solyc03g005610.2.1	Tomato	cytosol	21.58	10.2

Protein Annotations

MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	GO:GO:0046872	InterPro:IPR000626	InterPro:IPR038582
UniProt:K4DHS4	PFAM:PF00240	PFAM:PF01599	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053
PANTHER:PTHR10666	PANTHER:PTHR10666:SF257	InterPro:Ribosomal_S27a	InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf	SMART:SM00213
SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829	EnsemblPlantsGene:Solyc12g099030.1	EnsemblPlants:Solyc12g099030.1.1	UniParc:UPI000276A52D
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:

Description

No Description!

Coordinates

chr12:+:66336190..66338446

Molecular Weight (calculated)

21510.3 Da

IEP (calculated)

10.363

GRAVY (calculated)

-0.538

Length

190 amino acids

Sequence
(BLAST)

001: MTQWISIGSK NPSSTFYPLL PSILCAAELF SFKFMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST
101: LHLVLRLRGG AKKRKKKTYT KPKKIKHKKK KVKLAVLQFY KVDDSGKVQR LRKECPNAEC GAGTFMANHF DRHYCGKCGL TYVYQKAGGD

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.