Factsheet for GSMUA_Achr8P22260_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr2P15100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT2G47110.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166
AT3G62250.1	GSMUA_Achr2P15100_001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P08430_001	Banana	cytosol	100.0	100.0
GSMUA_AchrUn_...	Banana	cytosol	98.73	98.73
Solyc12g098940.1.1	Tomato	cytosol, nucleus	96.82	97.44
PGSC0003DMT400011939	Potato	cytosol	96.82	97.44
TraesCS1A01G397400.1	Wheat	cytosol	96.18	97.42
TraesCS1B01G425700.1	Wheat	cytosol	96.18	97.42
TraesCS1D01G405400.1	Wheat	cytosol	96.18	97.42
PGSC0003DMT400013321	Potato	cytosol	96.18	96.79
VIT_08s0032g00900.t01	Wine grape	cytosol	96.18	96.79
VIT_17s0119g00050.t01	Wine grape	cytosol	96.18	96.79
EES17768	Sorghum	cytosol	95.54	96.77
TraesCS1A01G105400.1	Wheat	cytosol	95.54	96.77
TraesCS1A01G397500.1	Wheat	golgi, unclear	95.54	96.77
TraesCS1B01G130900.1	Wheat	cytosol	95.54	96.77
TraesCS1D01G109800.1	Wheat	cytosol	95.54	96.77
EES02888	Sorghum	cytosol	95.54	96.77
Os05t0160200-01	Rice	nucleus	95.54	96.77
Os01t0328400-01	Rice	nucleus	95.54	96.77
Solyc01g056940.2.1	Tomato	nucleus	95.54	96.15
KRH11776	Soybean	nucleus	94.9	96.13
KRH74571	Soybean	cytosol	94.27	95.48
KRH69588	Soybean	nucleus	94.27	95.48
KRH36782	Soybean	nucleus	93.63	94.84
CDY50916	Canola	cytosol	94.27	94.27
CDX83344	Canola	cytosol	94.27	94.27
CDY25100	Canola	cytosol	93.63	93.63
CDY66301	Canola	cytosol	93.63	93.63
CDY11410	Canola	cytosol	93.63	93.63
CDX93983	Canola	cytosol	93.63	93.63
CDX76623	Canola	cytosol	93.63	93.63
CDX67885	Canola	cytosol	93.63	93.63
AT2G47110.1	Thale cress	cytosol	92.99	92.99
AT3G62250.1	Thale cress	cytosol	92.99	92.99
CDY44146	Canola	cytosol	89.81	90.38
CDY25783	Canola	cytosol	89.81	90.38
CDY12472	Canola	cytosol	89.81	90.38
AT1G23410.1	Thale cress	cytosol	89.17	89.74
CDY04715	Canola	cytosol	89.17	89.74
GSMUA_Achr11P...	Banana	cytosol	44.59	86.42
HORVU1Hr1G023660.1	Barley	extracellular	95.54	83.8
GSMUA_Achr1P24990_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	84.08	83.02
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	97.45	81.82
Solyc12g099030.1.1	Tomato	plastid	96.82	80.0
PGSC0003DMT400011737	Potato	cytosol	91.08	79.01
GSMUA_Achr8P32920_001	Banana	cytosol	53.5	65.62
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	53.5	65.62
GSMUA_Achr5P00970_001	Banana	cytosol	53.5	65.62
GSMUA_Achr11P...	Banana	cytosol	52.87	64.84
GSMUA_Achr7P26310_001	Banana	cytosol	54.78	55.13
Zm00001d032616_P001	Maize	plastid	54.78	55.13
GSMUA_Achr3P30150_001	Banana	cytosol	54.78	54.78
HORVU1Hr1G087690.8	Barley	nucleus	73.89	43.28
GSMUA_Achr10P...	Banana	cytosol, extracellular	51.59	43.09
GSMUA_Achr4P04260_001	Banana	cytosol	26.11	39.42
GSMUA_Achr5P00760_001	Banana	cytosol	32.48	29.65
GSMUA_AchrUn_...	Banana	cytosol	8.92	15.05
GSMUA_Achr8P07340_001	Banana	cytosol, plasma membrane	10.83	12.32
GSMUA_Achr9P30160_001	Banana	cytosol	5.1	10.39

Protein Annotations

MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr8G22260_001	EnsemblPlants:GSMUA_Achr8P22260_001	EnsemblPlants:GSMUA_Achr8T22260_001	InterPro:IPR000626	InterPro:IPR038582
UniProt:M0TSM9	PFAM:PF00240	PFAM:PF01599	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053
PANTHER:PTHR10666	PANTHER:PTHR10666:SF257	InterPro:Ribosomal_S27a	InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf	SMART:SM00213
SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI00029632C9	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:	:	:

Description

Ubiquitin-40S ribosomal protein S27a-1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G22260_001]

Coordinates

chr8:-:26900390..26901035

Molecular Weight (calculated)

17845.8 Da

IEP (calculated)

10.438

GRAVY (calculated)

-0.743

Length

157 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: AVLQFYKVDD ATGKVTRLRK ECPNAECGAG TFMANHFDRH YCGKCGLTYV YQKAQGE

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.