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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G47110.1 CDY03088 AT2G01950.1 19000166
AT2G47110.1 CDY17621 AT2G01950.1 19000166
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY44146 Canola cytosol 100.0 100.0
CDY12472 Canola cytosol 100.0 100.0
CDY04715 Canola cytosol 99.36 99.36
CDX67885 Canola cytosol 93.59 92.99
CDY66301 Canola cytosol 93.59 92.99
CDY50916 Canola cytosol 93.59 92.99
CDY25100 Canola cytosol 93.59 92.99
CDY11410 Canola cytosol 93.59 92.99
CDX93983 Canola cytosol 93.59 92.99
CDX83344 Canola cytosol 93.59 92.99
CDX76623 Canola cytosol 93.59 92.99
AT2G47110.1 Thale cress cytosol 92.95 92.36
PGSC0003DMT400011939 Potato cytosol 91.03 91.03
Solyc12g098940.1.1 Tomato cytosol, nucleus 91.03 91.03
VIT_17s0119g00050.t01 Wine grape cytosol 91.03 91.03
Os05t0160200-01 Rice nucleus 90.38 90.97
VIT_08s0032g00900.t01 Wine grape cytosol 90.38 90.38
PGSC0003DMT400013321 Potato cytosol 90.38 90.38
TraesCS1B01G130900.1 Wheat cytosol 89.74 90.32
EES17768 Sorghum cytosol 89.74 90.32
TraesCS1A01G105400.1 Wheat cytosol 89.74 90.32
TraesCS1A01G397400.1 Wheat cytosol 89.74 90.32
TraesCS1A01G397500.1 Wheat golgi, unclear 89.74 90.32
TraesCS1B01G425700.1 Wheat cytosol 89.74 90.32
TraesCS1D01G109800.1 Wheat cytosol 89.74 90.32
TraesCS1D01G405400.1 Wheat cytosol 89.74 90.32
GSMUA_Achr8P22260_001 Banana cytosol 90.38 89.81
GSMUA_Achr3P08430_001 Banana cytosol 90.38 89.81
Solyc01g056940.2.1 Tomato nucleus 89.74 89.74
Os01t0328400-01 Rice nucleus 89.1 89.68
EES02888 Sorghum cytosol 89.1 89.68
GSMUA_AchrUn_... Banana cytosol 89.1 88.53
HORVU1Hr1G023660.1 Barley extracellular 89.74 78.21
VIT_07s0005g02160.t01 Wine grape cytosol, plastid 91.67 76.47
PGSC0003DMT400011737 Potato cytosol 88.46 76.24
Solyc12g099030.1.1 Tomato plastid 91.03 74.74
CDX75065 Canola cytosol 53.85 65.62
CDX75066 Canola cytosol 53.85 65.62
CDX78108 Canola cytosol 53.85 65.62
CDX95351 Canola cytosol 53.85 65.62
CDX84576 Canola cytosol 53.85 65.62
CDX84153 Canola cytosol 53.85 65.62
CDX79660 Canola cytosol 53.85 65.62
CDX73619 Canola cytosol 53.85 65.12
CDY39163 Canola cytosol 40.38 62.38
CDY27155 Canola cytosol 55.13 55.84
CDY12428 Canola cytosol 55.13 55.84
CDY50712 Canola cytosol 55.77 55.77
CDY31710 Canola cytosol 55.77 55.06
CDX84182 Canola cytosol 55.77 54.72
CDX77550 Canola cytosol 54.49 54.49
Zm00001d032616_P001 Maize plastid 52.56 52.56
CDY23226 Canola cytosol, nucleus, plastid 23.08 50.7
CDX79186 Canola golgi, vacuole 52.56 50.31
HORVU1Hr1G087690.8 Barley nucleus 73.08 42.54
CDY00254 Canola cytosol 26.92 39.62
CDX79728 Canola cytosol 38.46 26.43
CDY29243 Canola cytosol 41.67 26.32
CDY71299 Canola cytosol 7.69 14.63
CDY71775 Canola cytosol 7.69 14.46
CDY70361 Canola cytosol 8.97 13.33
CDX95544 Canola cytosol 5.77 11.69
CDY46367 Canola cytosol 10.9 11.11
Protein Annotations
MapMan:17.1.3.1.29Gene3D:2.20.25.660Gene3D:3.10.20.90GO:A0A078GMF0UniProt:A0A078GMF0ProteinID:CDY12472.1
EnsemblPlants:CDY25783ProteinID:CDY25783ProteinID:CDY25783.1ProteinID:CDY44146.1GO:GO:0003674GO:GO:0003735
GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00033184001InterPro:IPR000626InterPro:IPR038582PFAM:PF00240
PFAM:PF01599PRINTS:PR00348ScanProsite:PS00299PFscan:PS50053PANTHER:PTHR10666PANTHER:PTHR10666:SF236
InterPro:Ribosomal_S27aInterPro:Ribosomal_zn-bdInterPro:S27a-like_sfSMART:SM00213SMART:SM01402SUPFAM:SSF54236
SUPFAM:SSF57829UniParc:UPI0004EB49A9InterPro:UbiquitinInterPro:Ubiquitin-like_domsfInterPro:Ubiquitin_CSInterPro:Ubiquitin_dom
SEG:seg:::::
Description
BnaA07g09990DBnaA07g09990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMF0]
Coordinates
chrLK032180:+:294045..294705
Molecular Weight (calculated)
17753.7 Da
IEP (calculated)
10.482
GRAVY (calculated)
-0.755
Length
156 amino acids
Sequence
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKPDEE
Best Arabidopsis Sequence Match ( AT1G23410.1 )
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
Arabidopsis Description
RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.