Factsheet for PGSC0003DMT400011939

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400075691
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT1G23410.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT1G23410.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT1G23410.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT1G23410.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT1G23410.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT1G23410.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT1G23410.1	PGSC0003DMT400077934	AT3G46090.1	17259181
AT2G47110.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT2G47110.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT2G47110.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT2G47110.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT2G47110.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT2G47110.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT2G47110.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT2G47110.1	PGSC0003DMT400077934	AT3G46090.1	17259181
AT3G62250.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT3G62250.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT3G62250.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT3G62250.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT3G62250.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT3G62250.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT3G62250.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT3G62250.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0119g00050.t01	Wine grape	cytosol	99.36	99.36
PGSC0003DMT400013321	Potato	cytosol	98.72	98.72
Solyc01g056940.2.1	Tomato	nucleus	98.08	98.08
KRH11776	Soybean	nucleus	96.79	97.42
GSMUA_Achr8P22260_001	Banana	cytosol	97.44	96.82
GSMUA_Achr3P08430_001	Banana	cytosol	97.44	96.82
KRH74571	Soybean	cytosol	96.15	96.77
KRH69588	Soybean	nucleus	96.15	96.77
KRH36782	Soybean	nucleus	95.51	96.13
CDY50916	Canola	cytosol	96.15	95.54
GSMUA_AchrUn_...	Banana	cytosol	96.15	95.54
CDX83344	Canola	cytosol	96.15	95.54
TraesCS1B01G425700.1	Wheat	cytosol	94.87	95.48
TraesCS1A01G397400.1	Wheat	cytosol	94.87	95.48
TraesCS1D01G405400.1	Wheat	cytosol	94.87	95.48
CDY66301	Canola	cytosol	95.51	94.9
CDY25100	Canola	cytosol	95.51	94.9
CDY11410	Canola	cytosol	95.51	94.9
CDX93983	Canola	cytosol	95.51	94.9
CDX76623	Canola	cytosol	95.51	94.9
CDX67885	Canola	cytosol	95.51	94.9
AT2G47110.1	Thale cress	cytosol	95.51	94.9
TraesCS1B01G130900.1	Wheat	cytosol	94.23	94.84
Os01t0328400-01	Rice	nucleus	94.23	94.84
TraesCS1A01G397500.1	Wheat	golgi, unclear	94.23	94.84
TraesCS1D01G109800.1	Wheat	cytosol	94.23	94.84
TraesCS1A01G105400.1	Wheat	cytosol	94.23	94.84
Os05t0160200-01	Rice	nucleus	94.23	94.84
EES02888	Sorghum	cytosol	94.23	94.84
EES17768	Sorghum	cytosol	94.23	94.84
AT3G62250.1	Thale cress	cytosol	94.87	94.27
CDY12472	Canola	cytosol	91.03	91.03
CDY25783	Canola	cytosol	91.03	91.03
CDY44146	Canola	cytosol	91.03	91.03
AT1G23410.1	Thale cress	cytosol	90.38	90.38
CDY04715	Canola	cytosol	90.38	90.38
HORVU1Hr1G023660.1	Barley	extracellular	94.23	82.12
PGSC0003DMT400011737	Potato	cytosol	92.95	80.11
PGSC0003DMT400000364	Potato	cytosol	53.85	65.62
PGSC0003DMT400047686	Potato	cytosol	53.85	65.62
PGSC0003DMT400031900	Potato	cytosol	53.85	65.62
PGSC0003DMT400013958	Potato	cytosol	53.85	65.62
PGSC0003DMT400015022	Potato	cytosol	53.85	64.12
PGSC0003DMT400029234	Potato	cytosol	55.77	56.49
Zm00001d032616_P001	Maize	plastid	53.85	53.85
PGSC0003DMT400057275	Potato	cytosol	53.85	44.21
HORVU1Hr1G087690.8	Barley	nucleus	73.72	42.91
PGSC0003DMT400027156	Potato	cytosol	61.54	25.2
PGSC0003DMT400037401	Potato	cytosol	60.9	24.8
PGSC0003DMT400089149	Potato	cytosol	61.54	21.01
PGSC0003DMT400010171	Potato	cytosol	55.77	16.29
PGSC0003DMT400037403	Potato	cytosol	54.49	15.95
PGSC0003DMT400033485	Potato	cytosol	16.67	12.56

Protein Annotations

EntrezGene:102593024	MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	ProteinID:ABA46785	ProteinID:ABA46785.1
ProteinID:ADO17492	ProteinID:ADO17492.1	ProteinID:CAA71132	ProteinID:CAA71132.1	ProteinID:CAA77737	ProteinID:CAA77737.1
ProteinID:CAA77738	ProteinID:CAA77738.1	EMBL:DQ200392	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EMBL:HM439286	InterPro:IPR000626	InterPro:IPR038582	RefSeq:NP_001275598.1	UniProt:O04829
PFAM:PF00240	PFAM:PF01599	EnsemblPlantsGene:PGSC0003DMG400004686	PGSC:PGSC0003DMG400004686	EnsemblPlants:PGSC0003DMT400011939	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF257	InterPro:Ribosomal_S27a	InterPro:Ribosomal_zn-bd
InterPro:S27a-like_sf	SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI00000ACFE1
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EMBL:Y10024	EMBL:Z11671
EMBL:Z11672	SEG:seg	:	:	:	:

Description

Ubiquitin extension protein [Source:PGSC_GENE;Acc:PGSC0003DMG400004686]

Coordinates

chr12:-:59768050..59770142

Molecular Weight (calculated)

17702.6 Da

IEP (calculated)

10.438

GRAVY (calculated)

-0.758

Length

156 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: AVLQFYKVDD SGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY QKAGGD

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.