CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
extracellular: 25724908
endoplasmic reticulum: 27224218
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 25724908 doi

VC Clarke, PC Loughlin, A Gavrin, C Chen, EM Brear, DA Day, PM Smith

From the ‡University of Sydney, School of Biological Sciences, Sydney Australia;, From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; penny.smith@sydney.edu.au., From the ‡University of Sydney, School of Biological Sciences, Sydney Australia; §Flinders University, School of Biological Sciences, Adelaide Australia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 27224218 doi

X Wang, S Komatsu

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10294
KRH23029
KRH24840
KRH29844
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	KRH42483	AT2G01950.1	19000166
AT1G23410.1	KRH58580	AT2G01950.1	19000166
AT1G23410.1	KRH10294	AT3G46090.1	17259181
AT1G23410.1	KRH23029	AT3G46090.1	17259181
AT1G23410.1	KRH24840	AT3G46090.1	17259181
AT1G23410.1	KRH29844	AT3G46090.1	17259181
AT3G62250.1	KRH42483	AT2G01950.1	19000166
AT3G62250.1	KRH58580	AT2G01950.1	19000166
AT3G62250.1	KRH10294	AT3G46090.1	17259181
AT3G62250.1	KRH23029	AT3G46090.1	17259181
AT3G62250.1	KRH24840	AT3G46090.1	17259181
AT3G62250.1	KRH29844	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74571	Soybean	cytosol	100.0	100.0
KRH11776	Soybean	nucleus	98.06	98.06
KRH36782	Soybean	nucleus	96.77	96.77
Solyc12g098940.1.1	Tomato	cytosol, nucleus	96.77	96.15
PGSC0003DMT400011939	Potato	cytosol	96.77	96.15
VIT_08s0032g00900.t01	Wine grape	cytosol	96.13	95.51
VIT_17s0119g00050.t01	Wine grape	cytosol	96.13	95.51
PGSC0003DMT400013321	Potato	cytosol	95.48	94.87
Solyc01g056940.2.1	Tomato	nucleus	95.48	94.87
TraesCS1D01G405400.1	Wheat	cytosol	94.84	94.84
TraesCS1B01G425700.1	Wheat	cytosol	94.84	94.84
TraesCS1A01G397400.1	Wheat	cytosol	94.84	94.84
GSMUA_Achr8P22260_001	Banana	cytosol	95.48	94.27
GSMUA_Achr3P08430_001	Banana	cytosol	95.48	94.27
Os01t0328400-01	Rice	nucleus	94.19	94.19
TraesCS1D01G109800.1	Wheat	cytosol	94.19	94.19
TraesCS1B01G130900.1	Wheat	cytosol	94.19	94.19
TraesCS1A01G397500.1	Wheat	golgi, unclear	94.19	94.19
TraesCS1A01G105400.1	Wheat	cytosol	94.19	94.19
EES17768	Sorghum	cytosol	94.19	94.19
EES02888	Sorghum	cytosol	94.19	94.19
Os05t0160200-01	Rice	nucleus	94.19	94.19
AT3G62250.1	Thale cress	cytosol	94.19	92.99
GSMUA_AchrUn_...	Banana	cytosol	94.19	92.99
AT1G23410.1	Thale cress	cytosol	90.97	90.38
HORVU1Hr1G023660.1	Barley	extracellular	94.19	81.56
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	96.77	80.21
Solyc12g099030.1.1	Tomato	plastid	96.77	78.95
PGSC0003DMT400011737	Potato	cytosol	91.61	78.45
KRG96204	Soybean	cytosol	54.19	65.62
KRH53585	Soybean	cytosol	54.19	65.62
KRH64348	Soybean	cytosol, endoplasmic reticulum	54.19	65.62
KRH67947	Soybean	cytosol	54.19	65.62
KRH43738	Soybean	cytosol	56.13	56.49
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	56.13	56.49
KRG99541	Soybean	cytosol	38.71	54.05
KRH02501	Soybean	cytosol	52.9	53.59
Zm00001d032616_P001	Maize	plastid	53.55	53.21
HORVU1Hr1G087690.8	Barley	nucleus	74.19	42.91
KRH38035	Soybean	cytosol	31.61	37.69
KRH35592	Soybean	cytosol	61.94	31.48
KRH19455	Soybean	cytosol	61.94	31.48
KRG91230	Soybean	cytosol	61.94	31.48
KRH32433	Soybean	cytosol, endoplasmic reticulum	61.94	31.37
KRH19453	Soybean	cytosol	61.94	25.2
KRH02499	Soybean	cytosol	61.29	24.93
KRH20404	Soybean	cytosol	60.65	20.57
KRH50099	Soybean	cytosol, endoplasmic reticulum, nucleus	60.65	17.64
KRH20401	Soybean	cytosol	60.65	17.64
KRH19844	Soybean	cytosol	12.9	8.7

Protein Annotations

EntrezGene:100527579	EntrezGene:100784307	MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	EMBL:ACUP02000049
EMBL:ACUP02000721	EMBL:BT092430	UniProt:C6T4R9	EnsemblPlantsGene:GLYMA_02G036000	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038582	EnsemblPlants:KRH69588	ProteinID:KRH69588
ProteinID:KRH69588.1	ProteinID:KRH74571.1	PFAM:PF00240	PFAM:PF01599	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF236	InterPro:Ribosomal_S27a	InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf
SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI0000E64865	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:3323224..3325261

Molecular Weight (calculated)

17668.6 Da

IEP (calculated)

10.393

GRAVY (calculated)

-0.754

Length

155 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: GILQFYKVDD SGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY QKADA

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.