Factsheet for VIT_07s0005g02160.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0011g06410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT2G47110.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166
AT3G62250.1	VIT_01s0011g06410.t01	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_17s0119g00050.t01	Wine grape	cytosol	82.35	98.72
VIT_08s0032g00900.t01	Wine grape	cytosol	82.35	98.72
GSMUA_Achr8P22260_001	Banana	cytosol	81.82	97.45
GSMUA_Achr3P08430_001	Banana	cytosol	81.82	97.45
KRH11776	Soybean	nucleus	80.75	97.42
KRH74571	Soybean	cytosol	80.21	96.77
KRH69588	Soybean	nucleus	80.21	96.77
CDX83344	Canola	cytosol	80.75	96.18
CDY50916	Canola	cytosol	80.75	96.18
GSMUA_AchrUn_...	Banana	cytosol	80.75	96.18
KRH36782	Soybean	nucleus	79.68	96.13
CDX93983	Canola	cytosol	80.21	95.54
CDY11410	Canola	cytosol	80.21	95.54
CDY25100	Canola	cytosol	80.21	95.54
CDY66301	Canola	cytosol	80.21	95.54
CDX76623	Canola	cytosol	80.21	95.54
CDX67885	Canola	cytosol	80.21	95.54
TraesCS1D01G405400.1	Wheat	cytosol	79.14	95.48
TraesCS1B01G425700.1	Wheat	cytosol	79.14	95.48
TraesCS1A01G397400.1	Wheat	cytosol	79.14	95.48
AT2G47110.1	Thale cress	cytosol	79.68	94.9
AT3G62250.1	Thale cress	cytosol	79.68	94.9
EES17768	Sorghum	cytosol	78.61	94.84
EES02888	Sorghum	cytosol	78.61	94.84
Os01t0328400-01	Rice	nucleus	78.61	94.84
Os05t0160200-01	Rice	nucleus	78.61	94.84
TraesCS1A01G105400.1	Wheat	cytosol	78.61	94.84
TraesCS1A01G397500.1	Wheat	golgi, unclear	78.61	94.84
TraesCS1B01G130900.1	Wheat	cytosol	78.61	94.84
TraesCS1D01G109800.1	Wheat	cytosol	78.61	94.84
CDY44146	Canola	cytosol	76.47	91.67
CDY25783	Canola	cytosol	76.47	91.67
CDY12472	Canola	cytosol	76.47	91.67
AT1G23410.1	Thale cress	cytosol	75.94	91.03
CDY04715	Canola	cytosol	75.94	91.03
Solyc12g099030.1.1	Tomato	plastid	85.56	84.21
HORVU1Hr1G023660.1	Barley	extracellular	80.21	83.8
VIT_08s0007g03030.t01	Wine grape	cytosol	44.92	65.62
VIT_16s0098g01190.t01	Wine grape	cytosol	44.92	65.62
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	46.52	56.13
Zm00001d032616_P001	Maize	plastid	44.92	53.85
HORVU1Hr1G087690.8	Barley	nucleus	61.5	42.91
VIT_19s0177g00040.t01	Wine grape	cytosol	51.34	25.2
VIT_14s0036g01020.t01	Wine grape	cytosol	53.48	22.94
VIT_19s0177g00070.t01	Wine grape	cytosol	51.34	21.01
VIT_14s0036g00990.t01	Wine grape	cytosol	53.48	18.59
VIT_14s0036g00930.t01	Wine grape	extracellular	53.48	10.05

Protein Annotations

EntrezGene:100258943	wikigene:100258943	MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	EMBL:AM426496
EMBL:AM482379	ProteinID:CAN70884	ProteinID:CAN70884.1	ProteinID:CAN71283	ProteinID:CAN71283.1	ProteinID:CCB60052
ProteinID:CCB60052.1	UniProt:F6HZD7	EMBL:FN596502	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038582	EntrezGene:LOC100258943	wikigene:LOC100258943	PFAM:PF00240
PFAM:PF01599	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF257
InterPro:Ribosomal_S27a	InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf	SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236
SUPFAM:SSF57829	TIGR:TC52640	UniParc:UPI000210A54A	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	ArrayExpress:VIT_07s0005g02160	EnsemblPlantsGene:VIT_07s0005g02160	EnsemblPlants:VIT_07s0005g02160.t01	RefSeq:XP_002279878	RefSeq:XP_002279878.1
RefSeq:XP_003632417	RefSeq:XP_003632417.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:4556805..4557634

Molecular Weight (calculated)

21137.6 Da

IEP (calculated)

10.438

GRAVY (calculated)

-0.859

Length

187 amino acids

Sequence
(BLAST)

001: MTVHSHWASG QSQLHPNPRN PNPYPSSPDA KMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGIPPD QQRLIFAGKQ LEDGRTLADY NIQKESTLHL
101: VLRLRGGAKK RKKKTYTKPK KIKHKKKKVK LAVLQFYKVD DSGKVQRLRK ECPNAECGAG TFMANHFDRH YCGKCGLTYV YQKAGGE

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.