Factsheet for VIT_08s0007g03030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75065	Canola	cytosol	100.0	100.0
KRH64348	Soybean	cytosol, endoplasmic reticulum	100.0	100.0
KRG96204	Soybean	cytosol	100.0	100.0
CDX95351	Canola	cytosol	100.0	100.0
CDX84576	Canola	cytosol	100.0	100.0
CDX84153	Canola	cytosol	100.0	100.0
CDX79660	Canola	cytosol	100.0	100.0
CDX78108	Canola	cytosol	100.0	100.0
CDX75066	Canola	cytosol	100.0	100.0
CDX73619	Canola	cytosol	100.0	99.22
VIT_16s0098g01190.t01	Wine grape	cytosol	99.22	99.22
Solyc08g083120.2.1	Tomato	cytosol, nucleus	99.22	99.22
Solyc03g082570.2.1	Tomato	cytosol	99.22	99.22
PGSC0003DMT400047686	Potato	cytosol	99.22	99.22
PGSC0003DMT400031900	Potato	cytosol	99.22	99.22
PGSC0003DMT400013958	Potato	cytosol	99.22	99.22
Solyc01g096290.2.1	Tomato	cytosol	99.22	99.22
PGSC0003DMT400000364	Potato	cytosol	99.22	99.22
GSMUA_Achr8P32920_001	Banana	cytosol	99.22	99.22
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	99.22	99.22
GSMUA_Achr5P00970_001	Banana	cytosol	99.22	99.22
Zm00001d005334_P001	Maize	cytosol, plastid	98.44	97.67
EER96363	Sorghum	cytosol	98.44	97.67
EER92591	Sorghum	cytosol	98.44	97.67
TraesCS4A01G306500.1	Wheat	cytosol	98.44	97.67
TraesCS4B01G008400.1	Wheat	cytosol	98.44	97.67
TraesCS4D01G006900.1	Wheat	cytosol	98.44	97.67
Solyc08g008590.2.1	Tomato	cytosol, nucleus	98.44	92.65
PGSC0003DMT400015022	Potato	cytosol	92.97	90.84
HORVU4Hr1G001170.5	Barley	cytosol	75.0	87.27
HORVU4Hr1G065100.3	Barley	cytosol	75.78	86.61
TraesCS4B01G233100.1	Wheat	cytosol	98.44	81.82
TraesCS4D01G234300.1	Wheat	cytosol	98.44	79.75
TraesCS4A01G077000.1	Wheat	cytosol	98.44	79.75
Solyc06g053210.2.1	Tomato	cytosol	89.06	60.64
VIT_17s0119g00050.t01	Wine grape	cytosol	65.62	53.85
VIT_08s0032g00900.t01	Wine grape	cytosol	64.84	53.21
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	64.06	52.9
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	65.62	44.92
VIT_19s0177g00040.t01	Wine grape	cytosol	68.75	23.1
VIT_14s0036g01020.t01	Wine grape	cytosol	68.75	20.18
VIT_19s0177g00070.t01	Wine grape	cytosol	70.31	19.69
VIT_14s0036g00990.t01	Wine grape	cytosol	70.31	16.73
VIT_14s0036g00930.t01	Wine grape	extracellular	70.31	9.05

Protein Annotations

EntrezGene:100246002	wikigene:100246002	MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	UniProt:A5AZI0
EMBL:AM441378	ProteinID:CAN60770	ProteinID:CAN60770.1	ProteinID:CBI30322	ProteinID:CBI30322.3	EMBL:FN595991
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587
InterPro:L40e_sf	EntrezGene:LOC100246002	wikigene:LOC100246002	PFAM:PF00240	PFAM:PF01020	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd
SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI000056EF24	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	ArrayExpress:VIT_08s0007g03030	EnsemblPlantsGene:VIT_08s0007g03030	EnsemblPlants:VIT_08s0007g03030.t01
unigene:Vvi.15396	RefSeq:XP_002282071	RefSeq:XP_002282071.2	RefSeq:XP_010654111.1	:	:

Description

No Description!

Coordinates

chr8:+:17078610..17080600

Molecular Weight (calculated)

14674.2 Da

IEP (calculated)

10.606

GRAVY (calculated)

-0.638

Length

128 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMALARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.