Factsheet for Zm00001d005334_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT3G52590.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92591	Sorghum	cytosol	100.0	100.0
TraesCS4A01G306500.1	Wheat	cytosol	98.45	98.45
TraesCS4B01G008400.1	Wheat	cytosol	98.45	98.45
TraesCS4D01G006900.1	Wheat	cytosol	98.45	98.45
CDX95351	Canola	cytosol	97.67	98.44
KRG96204	Soybean	cytosol	97.67	98.44
KRH53585	Soybean	cytosol	97.67	98.44
KRH64348	Soybean	cytosol, endoplasmic reticulum	97.67	98.44
KRH67947	Soybean	cytosol	97.67	98.44
VIT_08s0007g03030.t01	Wine grape	cytosol	97.67	98.44
CDX84576	Canola	cytosol	97.67	98.44
CDX84153	Canola	cytosol	97.67	98.44
CDX79660	Canola	cytosol	97.67	98.44
CDX78108	Canola	cytosol	97.67	98.44
CDX75066	Canola	cytosol	97.67	98.44
CDX75065	Canola	cytosol	97.67	98.44
CDX73619	Canola	cytosol	97.67	97.67
PGSC0003DMT400031900	Potato	cytosol	96.9	97.66
AT3G52590.1	Thale cress	cytosol	96.9	97.66
PGSC0003DMT400047686	Potato	cytosol	96.9	97.66
Solyc01g096290.2.1	Tomato	cytosol	96.9	97.66
Solyc03g082570.2.1	Tomato	cytosol	96.9	97.66
Solyc08g083120.2.1	Tomato	cytosol, nucleus	96.9	97.66
VIT_16s0098g01190.t01	Wine grape	cytosol	96.9	97.66
PGSC0003DMT400013958	Potato	cytosol	96.9	97.66
PGSC0003DMT400000364	Potato	cytosol	96.9	97.66
AT2G36170.1	Thale cress	cytosol	96.9	97.66
GSMUA_Achr5P00970_001	Banana	cytosol	96.9	97.66
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	96.9	97.66
GSMUA_Achr8P32920_001	Banana	cytosol	96.9	97.66
GSMUA_Achr11P...	Banana	cytosol	96.12	96.88
Solyc08g008590.2.1	Tomato	cytosol, nucleus	96.12	91.18
PGSC0003DMT400015022	Potato	cytosol	91.47	90.08
HORVU4Hr1G001170.5	Barley	cytosol	75.19	88.18
HORVU4Hr1G065100.3	Barley	cytosol	75.97	87.5
TraesCS4B01G233100.1	Wheat	cytosol	98.45	82.47
TraesCS4A01G077000.1	Wheat	cytosol	98.45	80.38
TraesCS4D01G234300.1	Wheat	cytosol	98.45	80.38
KRG99541	Soybean	cytosol	58.14	67.57
Solyc06g053210.2.1	Tomato	cytosol	87.6	60.11
Zm00001d036717_P001	Maize	cytosol	56.59	47.71
CDY00254	Canola	cytosol	33.33	40.57
Zm00001d032616_P001	Maize	plastid	47.29	39.1
Zm00001d020511_P001	Maize	plastid	41.09	27.75
Zm00001d053834_P002	Maize	cytosol, plastid	67.44	22.83
Zm00001d015327_P001	Maize	cytosol	69.77	16.89
Zm00001d053838_P005	Maize	cytosol, plastid	69.77	16.82

Protein Annotations

EntrezGene:103633247	EntrezGene:103633261	EntrezGene:103647262	MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90
UniProt:B6SHW9	EMBL:BT061197	EMBL:EU952334	EMBL:EU952501	EMBL:EU953098	EMBL:EU955270
EMBL:EU958499	EMBL:EU966735	EMBL:EU967205	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	ProteinID:ONM20857.1	PFAM:PF00240
PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255
InterPro:Ribosomal_L40e	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	UniParc:UPI00016FC529	InterPro:Ubiquitin
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EnsemblPlantsGene:Zm00001d005334	EnsemblPlants:Zm00001d005334_P001	EnsemblPlants:Zm00001d005334_T001

Description

Ubiquitin-60S ribosomal protein L40-1

Coordinates

chr2:-:169838654..169842673

Molecular Weight (calculated)

14759.2 Da

IEP (calculated)

10.606

GRAVY (calculated)

-0.676

Length

129 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLQALARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRAKKKIKN

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.