Factsheet for Zm00001d053834_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22065420

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCSU01G019400.1	Wheat	cytosol	39.9	98.06
EES01965	Sorghum	cytosol	77.95	97.38
TraesCS7A01G453300.1	Wheat	cytosol	77.69	97.37
AT1G55060.1	Thale cress	cytosol	54.86	90.87
HORVU6Hr1G016150.3	Barley	cytosol	44.88	88.6
Zm00001d036717_P001	Maize	cytosol	29.92	74.51
KRG91230	Soybean	cytosol	58.01	72.46
TraesCS7B01G354100.1	Wheat	cytosol	58.01	72.46
Zm00001d005334_P001	Maize	cytosol, plastid	22.83	67.44
Os06t0681400-01	Rice	cytosol	97.9	67.09
Zm00001d053838_P005	Maize	cytosol, plastid	78.48	55.89
Zm00001d015327_P001	Maize	cytosol	77.17	55.16
Zm00001d020511_P001	Maize	plastid	23.88	47.64
Zm00001d032616_P001	Maize	plastid	19.16	46.79

Protein Annotations

EntrezGene:100282068	MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAC49014.1	ProteinID:AQK60487.1	ProteinID:AQK60488.1
EMBL:BT087558	EMBL:EU959403	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626
PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR45095	PANTHER:PTHR45095:SF2
UniProt:Q41754	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI00000AB279	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EnsemblPlantsGene:Zm00001d053834	EnsemblPlants:Zm00001d053834_P002	EnsemblPlants:Zm00001d053834_T002	:

Description

Putative ubiquitin family protein%3B Ubiquitin2

Coordinates

chr4:+:242112638..242114341

Molecular Weight (calculated)

42717.6 Da

IEP (calculated)

7.847

GRAVY (calculated)

-0.447

Length

381 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG Y

Best Arabidopsis Sequence Match ( AT4G05320.1 )
(BLAST)

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.