Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCSU01G019400.1 | Wheat | cytosol | 61.3 | 90.97 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 73.04 | 87.05 |
| AT2G35635.1 | Thale cress | cytosol | 49.13 | 73.38 |
| AT1G31340.1 | Thale cress | cytosol | 49.57 | 73.08 |
| TraesCS7A01G453300.1 | Wheat | cytosol | 93.91 | 71.05 |
| AT4G02890.3 | Thale cress | cytosol | 93.48 | 70.49 |
| TraesCS7B01G354100.1 | Wheat | cytosol | 93.48 | 70.49 |
| KRG91230 | Soybean | cytosol | 93.48 | 70.49 |
| EES01965 | Sorghum | cytosol | 93.48 | 70.49 |
| AT1G65350.1 | Thale cress | cytosol | 91.74 | 66.14 |
| AT4G05050.2 | Thale cress | cytosol | 65.22 | 65.5 |
| AT5G37640.1 | Thale cress | cytosol | 88.7 | 63.35 |
| AT2G36170.1 | Thale cress | cytosol | 33.91 | 60.94 |
| AT3G52590.1 | Thale cress | cytosol | 33.91 | 60.94 |
| AT3G62250.1 | Thale cress | cytosol | 38.7 | 56.69 |
| AT2G47110.1 | Thale cress | cytosol | 38.26 | 56.05 |
| Zm00001d053834_P002 | Maize | cytosol, plastid | 90.87 | 54.86 |
| AT1G23410.1 | Thale cress | cytosol | 36.09 | 53.21 |
| AT4G05320.2 | Thale cress | cytosol | 93.91 | 47.26 |
| AT5G03240.3 | Thale cress | cytosol | 57.83 | 43.46 |
| Os06t0681400-01 | Rice | cytosol | 93.91 | 38.85 |
| AT5G20620.1 | Thale cress | cytosol | 61.74 | 37.17 |
| AT3G09790.2 | Thale cress | cytosol | 80.43 | 29.32 |
Protein Annotations
| MapMan:19.2.2.1.1 | Gene3D:3.10.20.90 | EntrezGene:841949 | EMBL:AC073944 | ProteinID:AEE33181.1 | ArrayExpress:AT1G55060 |
| EnsemblPlantsGene:AT1G55060 | RefSeq:AT1G55060 | TAIR:AT1G55060 | RefSeq:AT1G55060-TAIR-G | EnsemblPlants:AT1G55060.1 | TAIR:AT1G55060.1 |
| Unigene:At.49314 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000626 | RefSeq:NP_564675.1 | PFAM:PF00240 |
| PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF242 | UniProt:Q3E7K8 |
| SMART:SM00213 | SUPFAM:SSF54236 | Symbol:UBQ12 | UniParc:UPI000016314F | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf |
| InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : | : | : |
Description
UBQ12Polyubiquitin 12 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7K8]
Coordinates
chr1:+:20549533..20550225
Molecular Weight (calculated)
25844.1 Da
IEP (calculated)
6.696
GRAVY (calculated)
-0.446
Length
230 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFLKTLTG KTKVLEVESS DTIDNVKAKI QDIEGIPPDQ HRLIFAGKQL EDGRTLADYN VQEDSTLHLL LRFRGGMQIF VKTLTGKTIT LEVESSDTID
101: NLKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGISP DQQRLIFAGK
201: QHEDGRTLAD YNIQKESTLH LVLRLRGGSF
101: NLKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGISP DQQRLIFAGK
201: QHEDGRTLAD YNIQKESTLH LVLRLRGGSF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.