Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G36170.1 | Thale cress | cytosol | 100.0 | 100.0 |
| VIT_16s0098g01190.t01 | Wine grape | cytosol | 99.22 | 99.22 |
| CDX95351 | Canola | cytosol | 99.22 | 99.22 |
| CDX84576 | Canola | cytosol | 99.22 | 99.22 |
| CDX84153 | Canola | cytosol | 99.22 | 99.22 |
| CDX79660 | Canola | cytosol | 99.22 | 99.22 |
| CDX78108 | Canola | cytosol | 99.22 | 99.22 |
| CDX75066 | Canola | cytosol | 99.22 | 99.22 |
| CDX75065 | Canola | cytosol | 99.22 | 99.22 |
| CDX73619 | Canola | cytosol | 99.22 | 98.45 |
| PGSC0003DMT400013958 | Potato | cytosol | 98.44 | 98.44 |
| GSMUA_Achr5P00970_001 | Banana | cytosol | 98.44 | 98.44 |
| GSMUA_Achr8P07770_001 | Banana | cytosol, unclear | 98.44 | 98.44 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 98.44 | 98.44 |
| PGSC0003DMT400000364 | Potato | cytosol | 98.44 | 98.44 |
| PGSC0003DMT400031900 | Potato | cytosol | 98.44 | 98.44 |
| PGSC0003DMT400047686 | Potato | cytosol | 98.44 | 98.44 |
| Solyc01g096290.2.1 | Tomato | cytosol | 98.44 | 98.44 |
| Solyc03g082570.2.1 | Tomato | cytosol | 98.44 | 98.44 |
| Solyc08g083120.2.1 | Tomato | cytosol, nucleus | 98.44 | 98.44 |
| EER96363 | Sorghum | cytosol | 97.66 | 96.9 |
| TraesCS4A01G306500.1 | Wheat | cytosol | 97.66 | 96.9 |
| TraesCS4B01G008400.1 | Wheat | cytosol | 97.66 | 96.9 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 97.66 | 96.9 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 97.66 | 96.9 |
| EER92591 | Sorghum | cytosol | 97.66 | 96.9 |
| Solyc08g008590.2.1 | Tomato | cytosol, nucleus | 97.66 | 91.91 |
| PGSC0003DMT400015022 | Potato | cytosol | 92.19 | 90.08 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 74.22 | 86.36 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 75.0 | 85.71 |
| TraesCS4B01G233100.1 | Wheat | cytosol | 97.66 | 81.17 |
| TraesCS4D01G234300.1 | Wheat | cytosol | 97.66 | 79.11 |
| TraesCS4A01G077000.1 | Wheat | cytosol | 97.66 | 79.11 |
| KRG99541 | Soybean | cytosol | 58.59 | 67.57 |
| Solyc06g053210.2.1 | Tomato | cytosol | 88.28 | 60.11 |
| AT3G62250.1 | Thale cress | cytosol | 65.62 | 53.5 |
| AT2G47110.1 | Thale cress | cytosol | 65.62 | 53.5 |
| AT2G35635.1 | Thale cress | cytosol | 64.06 | 53.25 |
| AT1G23410.1 | Thale cress | cytosol | 64.84 | 53.21 |
| AT1G31340.1 | Thale cress | cytosol | 64.06 | 52.56 |
| AT1G55060.1 | Thale cress | cytosol | 60.94 | 33.91 |
| AT4G02890.3 | Thale cress | cytosol | 70.31 | 29.51 |
| AT1G65350.1 | Thale cress | cytosol | 70.31 | 28.21 |
| AT5G03240.3 | Thale cress | cytosol | 64.84 | 27.12 |
| AT5G37640.1 | Thale cress | cytosol | 65.62 | 26.09 |
| AT5G20620.1 | Thale cress | cytosol | 67.97 | 22.77 |
| AT4G05320.2 | Thale cress | cytosol | 70.31 | 19.69 |
| AT3G09790.2 | Thale cress | cytosol | 60.16 | 12.2 |
| AT4G05050.2 | Thale cress | cytosol | 9.38 | 5.24 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | EntrezGene:818189 | EntrezGene:824425 | UniProt:A0A178W3S3 |
| ProteinID:AAA32904.1 | ProteinID:AAA32905.1 | ProteinID:AAM15407.1 | EMBL:AC006921 | ProteinID:AEC09212.1 | ProteinID:AEE78966.1 |
| EMBL:AF360311 | EMBL:AK317456 | EMBL:AL353912 | ArrayExpress:AT3G52590 | EnsemblPlantsGene:AT3G52590 | RefSeq:AT3G52590 |
| TAIR:AT3G52590 | RefSeq:AT3G52590-TAIR-G | EnsemblPlants:AT3G52590.1 | TAIR:AT3G52590.1 | EMBL:AY035148 | EMBL:AY056360 |
| EMBL:AY059080 | EMBL:AY085820 | UniProt:B9DHA6 | ProteinID:CAB43405.1 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0019538 | GO:GO:0022625 | GO:GO:0030529 | InterPro:IPR000626 | InterPro:IPR038587 | InterPro:L40e_sf |
| RefSeq:NP_565836.1 | RefSeq:NP_566969.1 | ProteinID:OAP03336.1 | ProteinID:OAP11762.1 | PFAM:PF00240 | PFAM:PF01020 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 |
| PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | UniProt:Q42202 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd | SMART:SM00213 |
| SMART:SM01377 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | Symbol:UBQ1 | UniParc:UPI00001623C7 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | EMBL:Z29051 | : | : |
Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
Coordinates
chr3:+:19505379..19506932
Molecular Weight (calculated)
14734.3 Da
IEP (calculated)
10.606
GRAVY (calculated)
-0.637
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.