Factsheet for Solyc06g053210.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G36170.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G36170.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G52590.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT3G52590.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT3G52590.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083120.2.1	Tomato	cytosol, nucleus	61.17	89.84
Solyc03g082570.2.1	Tomato	cytosol	61.17	89.84
Solyc01g096290.2.1	Tomato	cytosol	61.17	89.84
GSMUA_Achr5P00970_001	Banana	cytosol	61.17	89.84
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	61.17	89.84
PGSC0003DMT400031900	Potato	cytosol	61.17	89.84
KRH64348	Soybean	cytosol, endoplasmic reticulum	60.64	89.06
KRH67947	Soybean	cytosol	60.64	89.06
KRH53585	Soybean	cytosol	60.64	89.06
VIT_08s0007g03030.t01	Wine grape	cytosol	60.64	89.06
KRG96204	Soybean	cytosol	60.64	89.06
TraesCS4D01G006900.1	Wheat	cytosol	60.64	88.37
TraesCS4B01G008400.1	Wheat	cytosol	60.64	88.37
TraesCS4A01G306500.1	Wheat	cytosol	60.64	88.37
VIT_16s0098g01190.t01	Wine grape	cytosol	60.11	88.28
AT2G36170.1	Thale cress	cytosol	60.11	88.28
AT3G52590.1	Thale cress	cytosol	60.11	88.28
Zm00001d005334_P001	Maize	cytosol, plastid	60.11	87.6
EER92591	Sorghum	cytosol	60.11	87.6
EER96363	Sorghum	cytosol	60.11	87.6
Solyc08g008590.2.1	Tomato	cytosol, nucleus	61.17	84.56
TraesCS4B01G233100.1	Wheat	cytosol	60.64	74.03
TraesCS4A01G077000.1	Wheat	cytosol	60.64	72.15
TraesCS4D01G234300.1	Wheat	cytosol	60.64	72.15
KRG99541	Soybean	cytosol	37.77	63.96
Solyc01g056940.2.1	Tomato	nucleus	43.09	51.92
Solyc12g098940.1.1	Tomato	cytosol, nucleus	42.55	51.28
Solyc10g005560.2.1	Tomato	cytosol, nucleus	40.96	50.0
Solyc11g005650.1.1	Tomato	plasma membrane	29.79	49.56
Solyc12g099030.1.1	Tomato	plastid	43.62	43.16
Solyc11g005640.1.1	Tomato	cytosol	35.11	29.73
Solyc07g064130.1.1	Tomato	nucleus	46.81	19.26
Solyc10g006480.1.1	Tomato	cytosol, extracellular, nucleus, unclear	46.81	19.26
Solyc11g005670.1.1	Tomato	cytosol, nucleus	47.34	16.67
Solyc03g005610.2.1	Tomato	cytosol	19.15	8.96

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	UniProt:K4C608	InterPro:L40e_sf	PFAM:PF00240
PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255
InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829
EnsemblPlantsGene:Solyc06g053210.2	EnsemblPlants:Solyc06g053210.2.1	UniParc:UPI0002767493	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:35947413..35950288

Molecular Weight (calculated)

21425.1 Da

IEP (calculated)

9.838

GRAVY (calculated)

-0.552

Length

188 amino acids

Sequence
(BLAST)

001: MCECFVSPHH YKPSPVTKPT LASDLLDTPL KKTQIFVKTL TGKTITLEVE SIDTIDNVKA KIQDKEGIPP DQQRLIFAGK QLEDGRTLAD YNIQKRSSTL
101: HLVLRLRSGI IEPSLMALAR KYNQEKMICR KCYARLHPCA VNCRKKKCGH SNQAKEEDQV NRFSAQWKGE RSTVNKVPPI LCTQPWLH

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.