Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23226 | Canola | cytosol, nucleus, plastid | 25.23 | 78.87 |
| Bra033420.1-P | Field mustard | cytosol, nucleus, plastid | 25.23 | 78.87 |
| TraesCS7B01G366400.1 | Wheat | cytosol | 25.23 | 72.73 |
| TraesCS2A01G475100.1 | Wheat | cytosol | 25.23 | 72.73 |
| Solyc10g005560.2.1 | Tomato | cytosol, nucleus | 44.59 | 64.29 |
| Os06t0673500-01 | Rice | cytosol | 54.05 | 57.42 |
| Solyc08g083120.2.1 | Tomato | cytosol, nucleus | 30.18 | 52.34 |
| Solyc03g082570.2.1 | Tomato | cytosol | 30.18 | 52.34 |
| Solyc01g096290.2.1 | Tomato | cytosol | 30.18 | 52.34 |
| Solyc08g008590.2.1 | Tomato | cytosol, nucleus | 29.73 | 48.53 |
| Solyc12g098940.1.1 | Tomato | cytosol, nucleus | 32.88 | 46.79 |
| Solyc01g056940.2.1 | Tomato | nucleus | 32.43 | 46.15 |
| Solyc11g005650.1.1 | Tomato | plasma membrane | 19.82 | 38.94 |
| Solyc12g099030.1.1 | Tomato | plastid | 32.88 | 38.42 |
| Solyc06g053210.2.1 | Tomato | cytosol | 29.73 | 35.11 |
| Solyc10g006480.1.1 | Tomato | cytosol, extracellular, nucleus, unclear | 68.47 | 33.26 |
| Solyc07g064130.1.1 | Tomato | nucleus | 68.02 | 33.04 |
| Solyc11g005670.1.1 | Tomato | cytosol, nucleus | 65.32 | 27.15 |
| TraesCSU01G125900.1 | Wheat | cytosol | 36.94 | 26.28 |
| Solyc03g005610.2.1 | Tomato | cytosol | 23.87 | 13.18 |
Protein Annotations
| EnsemblPlants:Solyc11g005640.1.1 | EnsemblPlantsGene:Solyc11g005640.1 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | PANTHER:PTHR45095 | PANTHER:PTHR45095:SF1 |
| PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | SEG:seg | SMART:SM00213 | SUPFAM:SSF54236 |
| UniParc:UPI0002769903 | UniProt:K4D4H7 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr11:-:486068..487283
Molecular Weight (calculated)
24968.0 Da
IEP (calculated)
9.142
GRAVY (calculated)
-0.568
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MQISVKTLTG KTITLEVESS DTIDNVKTKI QDKEGIPPDQ QRLIFPKEST LHLVLHLRGG MQIYVKTLTG KTITLEVESS DTINNVKAKV QDKGGYSSEP
101: VEIDVCWRMT TSKQRFKTRR SVSPPPPSSQ KHLIFAGKQL EDGRNLVDYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVKSSDTTD CESKDTGQGK
201: DSTRSTEAYL CWYRKTEECL TV
101: VEIDVCWRMT TSKQRFKTRR SVSPPPPSSQ KHLIFAGKQL EDGRNLVDYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVKSSDTTD CESKDTGQGK
201: DSTRSTEAYL CWYRKTEECL TV
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF
Arabidopsis Description
UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.