Factsheet for Solyc08g008590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G36170.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G36170.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G52590.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT3G52590.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT3G52590.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g083120.2.1	Tomato	cytosol, nucleus	93.38	99.22
Solyc03g082570.2.1	Tomato	cytosol	93.38	99.22
Solyc01g096290.2.1	Tomato	cytosol	93.38	99.22
GSMUA_Achr5P00970_001	Banana	cytosol	93.38	99.22
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	93.38	99.22
PGSC0003DMT400031900	Potato	cytosol	93.38	99.22
KRH64348	Soybean	cytosol, endoplasmic reticulum	92.65	98.44
KRH67947	Soybean	cytosol	92.65	98.44
KRH53585	Soybean	cytosol	92.65	98.44
VIT_08s0007g03030.t01	Wine grape	cytosol	92.65	98.44
KRG96204	Soybean	cytosol	92.65	98.44
TraesCS4D01G006900.1	Wheat	cytosol	92.65	97.67
TraesCS4B01G008400.1	Wheat	cytosol	92.65	97.67
TraesCS4A01G306500.1	Wheat	cytosol	92.65	97.67
VIT_16s0098g01190.t01	Wine grape	cytosol	91.91	97.66
AT2G36170.1	Thale cress	cytosol	91.91	97.66
AT3G52590.1	Thale cress	cytosol	91.91	97.66
Zm00001d005334_P001	Maize	cytosol, plastid	91.18	96.12
EER92591	Sorghum	cytosol	91.18	96.12
EER96363	Sorghum	cytosol	91.18	96.12
TraesCS4B01G233100.1	Wheat	cytosol	92.65	81.82
TraesCS4A01G077000.1	Wheat	cytosol	92.65	79.75
TraesCS4D01G234300.1	Wheat	cytosol	92.65	79.75
KRG99541	Soybean	cytosol	54.41	66.67
Solyc06g053210.2.1	Tomato	cytosol	84.56	61.17
Solyc12g098940.1.1	Tomato	cytosol, nucleus	61.03	53.21
Solyc01g056940.2.1	Tomato	nucleus	61.03	53.21
Solyc10g005560.2.1	Tomato	cytosol, nucleus	59.56	52.6
Solyc11g005650.1.1	Tomato	plasma membrane	41.18	49.56
Solyc12g099030.1.1	Tomato	plastid	61.03	43.68
Solyc11g005640.1.1	Tomato	cytosol	48.53	29.73
Solyc07g064130.1.1	Tomato	nucleus	65.44	19.47
Solyc10g006480.1.1	Tomato	cytosol, extracellular, nucleus, unclear	65.44	19.47
Solyc11g005670.1.1	Tomato	cytosol, nucleus	62.5	15.92
Solyc03g005610.2.1	Tomato	cytosol	25.74	8.71

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	UniProt:K4CIZ3	InterPro:L40e_sf	PFAM:PF00240
PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255
InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829
EnsemblPlantsGene:Solyc08g008590.2	EnsemblPlants:Solyc08g008590.2.1	UniParc:UPI000276AE87	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:2962192..2966912

Molecular Weight (calculated)

15521.2 Da

IEP (calculated)

10.658

GRAVY (calculated)

-0.587

Length

136 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKGESVVNF TKSTLHLVLR LRGGIIEPSL MALARKYNQE
101: KMICRKCYAR LHPRAVNCRK KKCGHSNQLR PKKKIK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.