Factsheet for Solyc12g098940.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1
Solyc06g075780.1.1
Solyc11g073060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT1G23410.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT1G23410.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT2G47110.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT2G47110.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT2G47110.1	Solyc11g073060.1.1	AT3G46090.1	17259181
AT3G62250.1	Solyc04g008430.1.1	AT2G01950.1	19000166
AT3G62250.1	Solyc06g075780.1.1	AT3G46090.1	17259181
AT3G62250.1	Solyc11g073060.1.1	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0032g00900.t01	Wine grape	cytosol	99.36	99.36
Solyc01g056940.2.1	Tomato	nucleus	98.08	98.08
KRH11776	Soybean	nucleus	96.79	97.42
GSMUA_Achr8P22260_001	Banana	cytosol	97.44	96.82
GSMUA_Achr3P08430_001	Banana	cytosol	97.44	96.82
KRH74571	Soybean	cytosol	96.15	96.77
KRH69588	Soybean	nucleus	96.15	96.77
KRH36782	Soybean	nucleus	95.51	96.13
CDX83344	Canola	cytosol	96.15	95.54
GSMUA_AchrUn_...	Banana	cytosol	96.15	95.54
CDY50916	Canola	cytosol	96.15	95.54
TraesCS1D01G405400.1	Wheat	cytosol	94.87	95.48
TraesCS1B01G425700.1	Wheat	cytosol	94.87	95.48
TraesCS1A01G397400.1	Wheat	cytosol	94.87	95.48
AT2G47110.1	Thale cress	cytosol	95.51	94.9
CDY66301	Canola	cytosol	95.51	94.9
CDX76623	Canola	cytosol	95.51	94.9
CDX67885	Canola	cytosol	95.51	94.9
CDY25100	Canola	cytosol	95.51	94.9
CDY11410	Canola	cytosol	95.51	94.9
CDX93983	Canola	cytosol	95.51	94.9
EES17768	Sorghum	cytosol	94.23	94.84
TraesCS1A01G105400.1	Wheat	cytosol	94.23	94.84
TraesCS1A01G397500.1	Wheat	golgi, unclear	94.23	94.84
TraesCS1B01G130900.1	Wheat	cytosol	94.23	94.84
TraesCS1D01G109800.1	Wheat	cytosol	94.23	94.84
Os05t0160200-01	Rice	nucleus	94.23	94.84
Os01t0328400-01	Rice	nucleus	94.23	94.84
EES02888	Sorghum	cytosol	94.23	94.84
AT3G62250.1	Thale cress	cytosol	94.87	94.27
CDY12472	Canola	cytosol	91.03	91.03
CDY25783	Canola	cytosol	91.03	91.03
CDY44146	Canola	cytosol	91.03	91.03
CDY04715	Canola	cytosol	90.38	90.38
AT1G23410.1	Thale cress	cytosol	90.38	90.38
HORVU1Hr1G023660.1	Barley	extracellular	94.23	82.12
Solyc12g099030.1.1	Tomato	plastid	100.0	82.11
Solyc01g096290.2.1	Tomato	cytosol	53.85	65.62
Solyc03g082570.2.1	Tomato	cytosol	53.85	65.62
Solyc08g083120.2.1	Tomato	cytosol, nucleus	53.85	65.62
Solyc08g008590.2.1	Tomato	cytosol, nucleus	53.21	61.03
Solyc10g005560.2.1	Tomato	cytosol, nucleus	55.77	56.49
Zm00001d032616_P001	Maize	plastid	53.85	53.85
Solyc11g005650.1.1	Tomato	plasma membrane	37.18	51.33
HORVU1Hr1G087690.8	Barley	nucleus	73.72	42.91
Solyc06g053210.2.1	Tomato	cytosol	51.28	42.55
Solyc11g005640.1.1	Tomato	cytosol	46.79	32.88
Solyc10g006480.1.1	Tomato	cytosol, extracellular, nucleus, unclear	61.54	21.01
Solyc07g064130.1.1	Tomato	nucleus	61.54	21.01
Solyc11g005670.1.1	Tomato	cytosol, nucleus	59.62	17.42
Solyc03g005610.2.1	Tomato	cytosol	25.0	9.7

Protein Annotations

MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038582	UniProt:K4DHR7	PFAM:PF00240	PFAM:PF01599
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF257	InterPro:Ribosomal_S27a
InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf	SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829
EnsemblPlantsGene:Solyc12g098940.1	EnsemblPlants:Solyc12g098940.1.1	UniParc:UPI00000ACFE1	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:66286897..66287367

Molecular Weight (calculated)

17702.6 Da

IEP (calculated)

10.438

GRAVY (calculated)

-0.758

Length

156 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKKKKVKL
101: AVLQFYKVDD SGKVQRLRKE CPNAECGAGT FMANHFDRHY CGKCGLTYVY QKAGGD

Best Arabidopsis Sequence Match ( AT2G47110.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKVDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGAQE

Arabidopsis Description

RPS27ABUBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.