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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
extracellular: 29876421
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 26455813 doi
P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KXG29523 Sorghum cytosol 82.93 99.48
TraesCS6B01G164600.1 Wheat cytosol 49.67 99.13
TraesCS2D01G405500.1 Wheat cytosol 48.8 97.81
TraesCS2A01G408200.1 Wheat cytosol 34.35 96.32
TraesCS6A01G087100.1 Wheat cytosol 48.14 96.07
TraesCS6B01G148000.2 Wheat cytosol 49.67 95.38
AT1G65350.1 Thale cress cytosol 65.21 93.42
HORVU5Hr1G019590.12 Barley extracellular 66.52 92.4
VIT_19s0177g00070.t01 Wine grape cytosol 82.93 82.93
Solyc10g006480.1.1 Tomato cytosol, extracellular, nucleus, unclear 82.93 82.93
KXG20618 Sorghum cytosol, plastid 49.45 82.78
EES05681 Sorghum cytosol 82.93 82.57
Solyc10g005560.2.1 Tomato cytosol, nucleus 26.91 79.87
PGSC0003DMT400027156 Potato cytosol 66.52 79.79
Zm00001d015327_P001 Maize cytosol 82.28 70.54
Solyc08g083120.2.1 Tomato cytosol, nucleus 19.69 70.31
Solyc03g082570.2.1 Tomato cytosol 19.69 70.31
Solyc01g096290.2.1 Tomato cytosol 19.69 70.31
Solyc11g005640.1.1 Tomato cytosol 33.04 68.02
OQU76939 Sorghum cytosol, plastid 66.3 66.59
Solyc08g008590.2.1 Tomato cytosol, nucleus 19.47 65.44
Os02t0161900-01 Rice extracellular, vacuole 66.3 62.6
Solyc12g098940.1.1 Tomato cytosol, nucleus 21.01 61.54
Solyc01g056940.2.1 Tomato nucleus 20.57 60.26
KRH50099 Soybean cytosol, endoplasmic reticulum, nucleus 66.52 57.04
KRH20401 Soybean cytosol 66.52 57.04
Solyc11g005670.1.1 Tomato cytosol, nucleus 66.3 56.74
Solyc11g005650.1.1 Tomato plasma membrane 13.35 53.98
Solyc12g099030.1.1 Tomato plastid 21.01 50.53
KRH20404 Soybean cytosol 49.89 49.89
Solyc06g053210.2.1 Tomato cytosol 19.26 46.81
Solyc03g005610.2.1 Tomato cytosol 20.79 23.63
Protein Annotations
MapMan:19.2.2.1.1Gene3D:3.10.20.90GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR000626
UniProt:K4CH96PFAM:PF00240PRINTS:PR00348ScanProsite:PS00299PFscan:PS50053SMART:SM00213
SUPFAM:SSF54236EnsemblPlantsGene:Solyc07g064130.1EnsemblPlants:Solyc07g064130.1.1UniParc:UPI000276C418InterPro:UbiquitinInterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CSInterPro:Ubiquitin_dom::::
Description
No Description!
Coordinates
chr7:+:66406117..66407490
Molecular Weight (calculated)
51198.9 Da
IEP (calculated)
7.882
GRAVY (calculated)
-0.436
Length
457 amino acids
Sequence
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPSDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF
Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF
Arabidopsis Description
UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.