Factsheet for Os02t0161900-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

plastid 4
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
YLoc:	cytosol

vacuole: 16212432
extracellular: 18372294

msms PMID: 16212432 doi

H Konishi, M Maeshima, S Komatsu

Department of Molecular Genetics, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan.

msms PMID: 18372294 doi

T Aki, M Shigyo, R Nakano, T Yoneyama, S Yanagisawa

Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, 113-8657 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G164600.1	Wheat	cytosol	47.11	99.56
TraesCS2D01G405500.1	Wheat	cytosol	46.28	98.25
TraesCS2A01G408200.1	Wheat	cytosol	32.64	96.93
TraesCS6A01G087100.1	Wheat	cytosol	45.66	96.51
Os04t0628100-01	Rice	plasma membrane	76.86	94.9
Os06t0681400-01	Rice	cytosol	95.45	83.09
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	25.62	81.05
Os09t0420800-01	Rice	cytosol, extracellular, plastid	25.62	81.05
KXG29523	Sorghum	cytosol	63.02	80.05
PGSC0003DMT400027156	Potato	cytosol	62.81	79.79
KRH50099	Soybean	cytosol, endoplasmic reticulum, nucleus	85.33	77.49
KRH20401	Soybean	cytosol	85.12	77.3
Os06t0673500-01	Rice	cytosol	33.06	76.56
KRH20404	Soybean	cytosol	70.45	74.62
HORVU5Hr1G019590.12	Barley	extracellular	49.17	72.34
Zm00001d015327_P001	Maize	cytosol	77.69	70.54
AT1G65350.1	Thale cress	cytosol	46.28	70.22
OQU76939	Sorghum	cytosol, plastid	64.67	68.79
VIT_19s0177g00070.t01	Wine grape	cytosol	62.81	66.52
Solyc07g064130.1.1	Tomato	nucleus	62.6	66.3
EES05681	Sorghum	cytosol	62.81	66.23
Os09t0452700-00	Rice	cytosol, extracellular, plasma membrane, plastid	18.39	63.57
Os05t0160200-01	Rice	nucleus	19.83	61.94
Os01t0328400-01	Rice	nucleus	19.63	61.29
Os10t0491801-00	Rice	cytosol	13.22	43.54
Os07t0489500-00	Rice	cytosol	20.25	38.58

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	UniProt:A0A0P0VF30	ProteinID:BAS77119.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0016874	InterPro:IPR000626	EnsemblPlantsGene:Os02g0161900	EnsemblPlants:Os02t0161900-01
PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	SMART:SM00213	SUPFAM:SSF54236
UniParc:UPI0003939E4F	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg

Description

RICE UBIQUITIN2Similar to polyubiquitin containing 7 ubiquitin monomers. (Os02t0161900-01)

Coordinates

chr2:-:3340458..3343060

Molecular Weight (calculated)

54166.5 Da

IEP (calculated)

9.708

GRAVY (calculated)

-0.479

Length

484 amino acids

Sequence
(BLAST)

001: ASAPPPKNFS PISRGSRRRI ESSRVLKMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEDG RTLADYNIQK ESTLHLVLRL
101: RGGMQIFVKT LTGKTITLEV ESSDTIDNVK AKIQDKEGIP PDQQRLIFAG KQLEDGRTLA DYNIQKESTL HLVLRLRGGM QIFVKTLTGK TITLEVESSD
201: TIDNVKAKIQ DKEGIPPDQQ RLIFAGKQLE DGRTLADYNI QKESTLHLVL RLRGGMQIFV KTLTGKTITL EVESSDTIDN VKAKIQDKEG IPPDQQRLIF
301: AGKQLEDGRT LADYNIQKES TLHLVLRLRG GMQIFVKTLT GKTITLEVES SDTIDNVKAK IQDKEGIPPD QQRLIFAGKQ LEDGRTLADY NIQKESTLHL
401: VLRLRGGMQI FVKTLTGKTI TLEVESSDTI DNVKAKIQDK EGIPPDQQRL IFAGKQLEDG RTLADYNIQK ESTLHLVLRL RGGQ

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.