Factsheet for Os09t0452700-00

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 25047395
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 25047395 doi

JY Kim, J Wu, SJ Kwon, H Oh, SE Lee, SG Kim, Y Wang, GK Agrawal, R Rakwal, KY Kang, IP Ahn, BG Kim, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G458600.1	Wheat	cytosol	92.86	91.55
TraesCS2B01G480400.1	Wheat	cytosol	92.14	90.85
TraesCS2B01G480300.1	Wheat	cytosol	92.14	90.85
TraesCS2A01G458000.1	Wheat	cytosol	92.14	90.85
TraesCS2A01G458100.1	Wheat	cytosol	91.43	90.14
TraesCS2D01G458700.1	Wheat	cytosol	90.71	89.44
EER99330	Sorghum	cytosol	88.57	86.71
HORVU2Hr1G104410.26	Barley	cytosol	85.0	67.23
Os05t0160200-01	Rice	nucleus	60.71	54.84
Os01t0328400-01	Rice	nucleus	60.71	54.84
Os09t0420800-01	Rice	cytosol, extracellular, plastid	58.57	53.59
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	58.57	53.59
HORVU2Hr1G104440.1	Barley	cytosol	92.86	46.43
Os07t0489500-00	Rice	cytosol	79.29	43.7
Os06t0673500-01	Rice	cytosol	61.43	41.15
Os10t0491801-00	Rice	cytosol	40.71	38.78
Os04t0628100-01	Rice	plasma membrane	62.86	22.45
Os02t0161900-01	Rice	extracellular, vacuole	63.57	18.39
Os06t0681400-01	Rice	cytosol	63.57	16.01

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	EntrezGene:4347232	ProteinID:BAD38019.1	ProteinID:BAF25251.1
ProteinID:BAT08394.1	ProteinID:EAZ44953.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	EnsemblPlantsGene:Os09g0452700	EnsemblPlants:Os09t0452700-00
PFAM:PF00240	PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF229	UniProt:Q67V00	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377
SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI0000426441	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	RefSeq:XP_015612663.1	SEG:seg	:	:	:

Description

Ubiquitin. (Os09t0452700-00)

Coordinates

chr9:+:16973695..16975737

Molecular Weight (calculated)

16019.6 Da

IEP (calculated)

10.623

GRAVY (calculated)

-0.789

Length

140 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGSRGG YPKGIEPNLR ELAQKYNENK
101: LVCRRCYARL PLRSTNCRKK KCGHSNEIRA KKRFMSKLSK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.