Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d032616_P001 | Maize | plastid | 53.74 | 50.64 |
| KXG38267 | Sorghum | cytosol | 54.42 | 50.0 |
| Os01t0328400-01 | Rice | nucleus | 50.34 | 47.74 |
| TraesCS1A01G166000.1 | Wheat | unclear | 52.38 | 47.53 |
| TraesCS1B01G182700.1 | Wheat | cytosol | 52.38 | 47.53 |
| TraesCS1D01G174700.1 | Wheat | cytosol | 52.38 | 47.53 |
| Os05t0160200-01 | Rice | nucleus | 49.66 | 47.1 |
| Os09t0452700-00 | Rice | cytosol, extracellular, plasma membrane, plastid | 38.78 | 40.71 |
| Os06t0650100-01 | Rice | cytosol, extracellular, plasma membrane | 39.46 | 37.91 |
| Os09t0420800-01 | Rice | cytosol, extracellular, plastid | 39.46 | 37.91 |
| Os06t0673500-01 | Rice | cytosol | 41.5 | 29.19 |
| Os07t0489500-00 | Rice | cytosol | 38.78 | 22.44 |
| HORVU1Hr1G043930.8 | Barley | plastid | 52.38 | 18.29 |
| Os04t0628100-01 | Rice | plasma membrane | 43.54 | 16.33 |
| Os02t0161900-01 | Rice | extracellular, vacuole | 43.54 | 13.22 |
| Os06t0681400-01 | Rice | cytosol | 43.54 | 11.51 |
Protein Annotations
| EntrezGene:107277614 | MapMan:17.1.3.1.29 | Gene3D:2.20.25.660 | Gene3D:3.10.20.90 | ProteinID:AAG13535.1 | ProteinID:AAP54400.1 |
| ProteinID:BAT11434.1 | ProteinID:EAZ16521.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| InterPro:IPR000626 | InterPro:IPR038582 | EnsemblPlantsGene:Os10g0491801 | EnsemblPlants:Os10t0491801-00 | PFAM:PF00240 | PFAM:PF01599 |
| PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF235 | UniProt:Q9FWV0 |
| InterPro:Ribosomal_S27a | InterPro:S27a-like_sf | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI00000A083C | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | RefSeq:XP_015614163.1 | SEG:seg | : |
Description
Similar to ubiquitin. (Os10t0491801-00)
Coordinates
chr10:-:18666474..18667000
Molecular Weight (calculated)
16486.2 Da
IEP (calculated)
9.671
GRAVY (calculated)
-0.635
Length
147 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTVMTQIFV KGLTGKTTAL RMEPSDTVES VKVKLVDKEG LPPDQQPLIF QGHQLDDGHT LIYYGIQEES TLHLLGRICG GGGGNKKRKK KAYATPKKGK
101: HEHRKEELAV LRHYRVDDVM GKVERLRLMC PNPECKDVGA LMAKHHD
101: HEHRKEELAV LRHYRVDDVM GKVERLRLMC PNPECKDVGA LMAKHHD
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHTHKKVKL
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
101: AVLQFYKVDG SGKVQRLKKE CPSVSCGPGT FMASHFDRHY CGKCGTTYVF KKADEE
Arabidopsis Description
RPS27AAUbiquitin-40S ribosomal protein S27a-1 [Source:UniProtKB/Swiss-Prot;Acc:P59271]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.