Factsheet for Zm00001d032616_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23508561
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G23410.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT2G47110.1	Zm00001d000055_P001	AT2G01950.1	19000166
AT3G62250.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG38267	Sorghum	cytosol	76.28	74.38
TraesCS1D01G174700.1	Wheat	cytosol	58.33	56.17
TraesCS1B01G182700.1	Wheat	cytosol	58.33	56.17
TraesCS1A01G166000.1	Wheat	unclear	58.33	56.17
GSMUA_Achr8P22260_001	Banana	cytosol	55.13	54.78
GSMUA_Achr3P08430_001	Banana	cytosol	55.13	54.78
VIT_17s0119g00050.t01	Wine grape	cytosol	53.85	53.85
PGSC0003DMT400011939	Potato	cytosol	53.85	53.85
PGSC0003DMT400013321	Potato	cytosol	53.85	53.85
Solyc01g056940.2.1	Tomato	nucleus	53.85	53.85
Solyc12g098940.1.1	Tomato	cytosol, nucleus	53.85	53.85
Os10t0491801-00	Rice	cytosol	50.64	53.74
KRH74571	Soybean	cytosol	53.21	53.55
KRH69588	Soybean	nucleus	53.21	53.55
KRH11776	Soybean	nucleus	53.21	53.55
AT3G62250.1	Thale cress	cytosol	53.85	53.5
GSMUA_AchrUn_...	Banana	cytosol	53.85	53.5
VIT_08s0032g00900.t01	Wine grape	cytosol	53.21	53.21
KRH36782	Soybean	nucleus	52.56	52.9
AT2G47110.1	Thale cress	cytosol	53.21	52.87
CDY66301	Canola	cytosol	53.21	52.87
CDY50916	Canola	cytosol	53.21	52.87
CDY25100	Canola	cytosol	53.21	52.87
CDY11410	Canola	cytosol	53.21	52.87
CDX93983	Canola	cytosol	53.21	52.87
CDX83344	Canola	cytosol	53.21	52.87
CDX76623	Canola	cytosol	53.21	52.87
CDX67885	Canola	cytosol	53.21	52.87
CDY44146	Canola	cytosol	52.56	52.56
CDY25783	Canola	cytosol	52.56	52.56
CDY12472	Canola	cytosol	52.56	52.56
CDY04715	Canola	cytosol	52.56	52.56
AT1G23410.1	Thale cress	cytosol	51.92	51.92
Zm00001d005334_P001	Maize	cytosol, plastid	39.1	47.29
PGSC0003DMT400011737	Potato	cytosol	53.21	45.86
GSMUA_Achr1P24990_001	Banana	cytosol, endoplasmic reticulum, mitochondrion, plastid	46.15	45.28
VIT_07s0005g02160.t01	Wine grape	cytosol, plastid	53.85	44.92
Solyc12g099030.1.1	Tomato	plastid	53.85	44.21
Zm00001d036717_P001	Maize	cytosol	37.18	37.91
Zm00001d020511_P001	Maize	plastid	28.21	23.04
HORVU1Hr1G043930.8	Barley	plastid	58.33	21.62
Zm00001d053834_P002	Maize	cytosol, plastid	46.79	19.16
Zm00001d053838_P005	Maize	cytosol, plastid	46.79	13.64
Zm00001d015327_P001	Maize	cytosol	45.51	13.32

Protein Annotations

EntrezGene:100282479	MapMan:17.1.3.1.29	Gene3D:2.20.25.660	Gene3D:3.10.20.90	UniProt:B6T7T6	EMBL:EU961051
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
GO:GO:0046872	InterPro:IPR000626	InterPro:IPR038582	ProteinID:ONM05571.1	PFAM:PF00240	PFAM:PF01599
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF235	InterPro:Ribosomal_S27a
InterPro:Ribosomal_zn-bd	InterPro:S27a-like_sf	SMART:SM00213	SMART:SM01402	SUPFAM:SSF54236	SUPFAM:SSF57829
UniParc:UPI000182CD69	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EnsemblPlantsGene:Zm00001d032616
EnsemblPlants:Zm00001d032616_P001	EnsemblPlants:Zm00001d032616_T001	:	:	:	:

Description

40S ribosomal protein S27a

Coordinates

chr1:-:232178532..232179278

Molecular Weight (calculated)

17127.8 Da

IEP (calculated)

8.903

GRAVY (calculated)

-0.399

Length

156 amino acids

Sequence
(BLAST)

001: MQIFVKTLSS TRTITLEVEP SDTVADVKAK VYESEGVPPA EQRLIFAGKQ LRDGCTLADY NIPKETMLSL CCRLLGGGPK KRNRKTFTTP KKGTHEHKNP
101: GLDAVLGRYR IDEATGKVER LRMQCPNPEC GPGVLMAAHA DRHVCGSCGL TFVIQN

Best Arabidopsis Sequence Match ( AT3G62250.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGAKKR KKKTYTKPKK IKHKHKKVKL
101: AVLQFYKIDG SGKVQRLRKE CPNATCGAGT FMASHFDRHY CGKCGLTYVY QKEGVEA

Arabidopsis Description

RPS27ACUbiquitin-40S ribosomal protein S27a-3 [Source:UniProtKB/Swiss-Prot;Acc:P59233]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.