Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d000055_P001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35635.1 | Zm00001d000055_P001 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G136800.1 | Wheat | cytosol | 59.69 | 78.62 |
| GSMUA_Achr4P04260_001 | Banana | cytosol | 41.88 | 76.92 |
| TraesCS5A01G224000.1 | Wheat | cytosol | 61.26 | 76.47 |
| TraesCS6A01G147500.1 | Wheat | cytosol | 61.26 | 76.47 |
| TraesCS6B01G176000.1 | Wheat | cytosol | 61.26 | 76.47 |
| AT2G35635.1 | Thale cress | cytosol | 60.73 | 75.32 |
| CDY31710 | Canola | cytosol | 61.26 | 74.05 |
| CDX84182 | Canola | cytosol | 61.26 | 73.58 |
| Zm00001d036717_P001 | Maize | cytosol | 56.02 | 69.93 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 59.16 | 57.07 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 27.75 | 41.09 |
| Zm00001d032616_P001 | Maize | plastid | 23.04 | 28.21 |
| Zm00001d053834_P002 | Maize | cytosol, plastid | 47.64 | 23.88 |
| Zm00001d015327_P001 | Maize | cytosol | 47.64 | 17.07 |
| Zm00001d053838_P005 | Maize | cytosol, plastid | 47.64 | 17.01 |
Protein Annotations
| EntrezGene:100282222 | Gene3D:3.10.20.90 | MapMan:35.1 | UniProt:A0A1D6I4G6 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR000626 | InterPro:Nedd8-like | ProteinID:ONM55034.1 | PFAM:PF00240 | PRINTS:PR00348 |
| ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF230 | SMART:SM00213 | SUPFAM:SSF54236 |
| UniParc:UPI00022158F6 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | EnsemblPlantsGene:Zm00001d020511 |
| EnsemblPlants:Zm00001d020511_P001 | EnsemblPlants:Zm00001d020511_T001 | SEG:seg | : | : | : |
Description
Ubiquitin-NEDD8-like protein RUB1
Coordinates
chr7:+:119798832..119802946
Molecular Weight (calculated)
21451.3 Da
IEP (calculated)
10.068
GRAVY (calculated)
-1.001
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: MRQARVNQIK EKGNFLGRSS ASLSQGSSSS PSSTTVRGRK RRGEDADLRE DPDGEDHHPR GGEQRHRRQR QSQNPADQQR LIFAGKQLED GRTLADYNIQ
101: KESTLHLVLR LRGGTMIKVK TLTGKEIEID IEPTDSIDRI KERVEEKEGI PPVQQRLIYA GKQLADDKTA KDYNIEGGSV LHLVLALRGG Y
101: KESTLHLVLR LRGGTMIKVK TLTGKEIEID IEPTDSIDRI KERVEEKEGI PPVQQRLIYA GKQLADDKTA KDYNIEGGSV LHLVLALRGG Y
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL
Arabidopsis Description
RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.