Factsheet for Zm00001d036717_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d000055_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31340.1	Zm00001d000055_P001	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G494400.1	Wheat	cytosol	91.5	91.5
HORVU7Hr1G113500.1	Barley	cytosol, extracellular	91.5	91.5
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	91.5	91.5
Os09t0420800-01	Rice	cytosol, extracellular, plastid	91.5	91.5
TraesCS5B01G222800.1	Wheat	cytosol	91.5	91.5
TraesCS5D01G231400.1	Wheat	cytosol	91.5	91.5
TraesCS7A01G506300.1	Wheat	cytosol, plastid	91.5	91.5
TraesCS7B01G413800.1	Wheat	cytosol	91.5	91.5
EER96746	Sorghum	cytosol	91.5	91.5
EER88734	Sorghum	cytosol	91.5	91.5
Solyc10g005560.2.1	Tomato	cytosol, nucleus	91.5	90.91
PGSC0003DMT400029234	Potato	cytosol	91.5	90.91
CDY27155	Canola	cytosol	90.85	90.26
CDY12428	Canola	cytosol	90.85	90.26
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	90.85	90.26
KRH43738	Soybean	cytosol	90.85	90.26
CDX77550	Canola	cytosol	91.5	89.74
AT1G31340.1	Thale cress	cytosol	91.5	89.74
GSMUA_Achr7P26310_001	Banana	cytosol	90.85	89.1
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	90.2	89.03
GSMUA_Achr3P30150_001	Banana	cytosol	90.2	87.9
TraesCS1A01G202800.1	Wheat	cytosol	86.93	85.81
TraesCS1D01G206100.1	Wheat	cytosol	84.97	83.87
TraesCS1D01G206400.1	Wheat	cytosol	84.31	83.23
TraesCS7D01G143000.1	Wheat	cytosol	84.31	83.23
TraesCS7A01G141700.1	Wheat	cytosol	83.66	82.58
HORVU5Hr1G065170.1	Barley	cytosol	91.5	71.07
HORVU7Hr1G029150.2	Barley	cytosol	81.7	68.68
HORVU7Hr1G029070.1	Barley	cytosol	81.7	66.49
HORVU7Hr1G029100.1	Barley	cytosol	81.7	65.44
HORVU3Hr1G014150.2	Barley	cytosol	83.66	63.05
HORVU3Hr1G014180.3	Barley	cytosol	83.66	63.05
Zm00001d005334_P001	Maize	cytosol, plastid	47.71	56.59
Zm00001d020511_P001	Maize	plastid	69.93	56.02
Zm00001d032616_P001	Maize	plastid	37.91	37.18
Zm00001d053834_P002	Maize	cytosol, plastid	74.51	29.92
Zm00001d053838_P005	Maize	cytosol, plastid	74.51	21.31
Zm00001d015327_P001	Maize	cytosol	73.86	21.2

Protein Annotations

EntrezGene:103629697	MapMan:19.2.2.1.1	MapMan:19.2.2.3.1	Gene3D:3.10.20.90	UniProt:A0A1D6LQK5	ProteinID:AQK81768.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR000626	InterPro:Nedd8-like	PFAM:PF00240
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF230	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI000221BFD3	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
EnsemblPlantsGene:Zm00001d036717	EnsemblPlants:Zm00001d036717_P001	EnsemblPlants:Zm00001d036717_T001	:	:	:

Description

ubiquitin3 ubiquitin3

Coordinates

chr6:-:98730481..98732747

Molecular Weight (calculated)

17059.8 Da

IEP (calculated)

5.840

GRAVY (calculated)

-0.319

Length

153 amino acids

Sequence
(BLAST)

001: MQLFILTLTG KTITVEVESS DTIDNVKAKI QDKEGILPDH QRLIFAGKQL EDGKTLADYN IQKESTLPLV LRLKGGTMIK VKTLTGKEIE IDIEPNDTIY
101: RIKERVEEKE GIPPIQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGC

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.