Factsheet for PGSC0003DMT400029234

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400075691
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31340.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT1G31340.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT1G31340.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT1G31340.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT1G31340.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT1G31340.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT1G31340.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT1G31340.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g005560.2.1	Tomato	cytosol, nucleus	100.0	100.0
TraesCS5B01G222800.1	Wheat	cytosol	98.7	99.35
Os09t0420800-01	Rice	cytosol, extracellular, plastid	98.7	99.35
Os06t0650100-01	Rice	cytosol, extracellular, plasma membrane	98.7	99.35
HORVU7Hr1G113500.1	Barley	cytosol, extracellular	98.7	99.35
TraesCS7B01G413800.1	Wheat	cytosol	98.7	99.35
EER96746	Sorghum	cytosol	98.7	99.35
EER88734	Sorghum	cytosol	98.7	99.35
KRH13718	Soybean	cytosol, endoplasmic reticulum, nucleus	98.05	98.05
KRH43738	Soybean	cytosol	98.05	98.05
AT1G31340.1	Thale cress	cytosol	98.7	97.44
CDY50712	Canola	cytosol	98.7	97.44
VIT_19s0085g00040.t01	Wine grape	cytosol, extracellular	97.4	96.77
GSMUA_Achr7P26310_001	Banana	cytosol	97.4	96.15
GSMUA_Achr3P30150_001	Banana	cytosol	97.4	95.54
TraesCS1A01G202800.1	Wheat	cytosol	94.16	93.55
TraesCS1D01G206100.1	Wheat	cytosol	92.21	91.61
Zm00001d036717_P001	Maize	cytosol	90.91	91.5
TraesCS7D01G143000.1	Wheat	cytosol	91.56	90.97
TraesCS7A01G141700.1	Wheat	cytosol	90.91	90.32
TraesCS1D01G206400.1	Wheat	cytosol	90.91	90.32
HORVU5Hr1G065170.1	Barley	cytosol	98.7	77.16
HORVU7Hr1G029150.2	Barley	cytosol	88.96	75.27
HORVU7Hr1G029070.1	Barley	cytosol	87.66	71.81
HORVU7Hr1G029100.1	Barley	cytosol	88.96	71.73
HORVU3Hr1G014150.2	Barley	cytosol	90.26	68.47
HORVU3Hr1G014180.3	Barley	cytosol	90.26	68.47
PGSC0003DMT400013958	Potato	cytosol	53.25	64.06
PGSC0003DMT400031900	Potato	cytosol	53.25	64.06
PGSC0003DMT400047686	Potato	cytosol	53.25	64.06
PGSC0003DMT400000364	Potato	cytosol	53.25	64.06
PGSC0003DMT400015022	Potato	cytosol	53.25	62.6
PGSC0003DMT400057275	Potato	cytosol	75.32	61.05
PGSC0003DMT400011939	Potato	cytosol	56.49	55.77
PGSC0003DMT400013321	Potato	cytosol	55.84	55.13
PGSC0003DMT400011737	Potato	cytosol	56.49	48.07
PGSC0003DMT400027156	Potato	cytosol	80.52	32.55
PGSC0003DMT400037401	Potato	cytosol	71.43	28.72
PGSC0003DMT400089149	Potato	cytosol	80.52	27.13
PGSC0003DMT400037403	Potato	cytosol	75.97	21.95
PGSC0003DMT400010171	Potato	cytosol	71.43	20.6
PGSC0003DMT400033485	Potato	cytosol	24.03	17.87

Protein Annotations

EntrezGene:102587939	MapMan:19.2.2.3.1	Gene3D:3.10.20.90	ProteinID:ADO17492	ProteinID:ADO17492.1	ProteinID:CAA77737
ProteinID:CAA77737.1	ProteinID:CAA77738	ProteinID:CAA77738.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EMBL:HM439286	InterPro:IPR000626	UniProt:M1ASG4	InterPro:Nedd8-like	PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400011242
PGSC:PGSC0003DMG400011242	EnsemblPlants:PGSC0003DMT400029234	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666
PANTHER:PTHR10666:SF230	SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI000276C76D	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_006352583.1	EMBL:Z11671	EMBL:Z11672	SEG:seg

Description

NEDD8 RUB2 [Source:PGSC_GENE;Acc:PGSC0003DMG400011242]

Coordinates

chr10:-:638232..643796

Molecular Weight (calculated)

17236.9 Da

IEP (calculated)

6.554

GRAVY (calculated)

-0.441

Length

154 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGRL

Best Arabidopsis Sequence Match ( AT1G31340.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYNIEGG SVLHLVLALR GGFGLL

Arabidopsis Description

RUB1RUB1 [Source:UniProtKB/TrEMBL;Acc:A0A178W1F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.