Factsheet for PGSC0003DMT400037403

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400075691
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G20620.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT5G20620.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT5G20620.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT5G20620.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT5G20620.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT5G20620.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT5G20620.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT5G20620.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G03240.3	Thale cress	cytosol	56.85	99.02
TraesCS6A01G087800.1	Wheat	extracellular	27.2	84.8
PGSC0003DMT400029234	Potato	cytosol	21.95	75.97
PGSC0003DMT400057275	Potato	cytosol	25.7	72.11
TraesCS7A01G453500.1	Wheat	cytosol	21.76	67.84
PGSC0003DMT400000364	Potato	cytosol	15.57	64.84
PGSC0003DMT400047686	Potato	cytosol	15.57	64.84
PGSC0003DMT400013958	Potato	cytosol	15.57	64.84
PGSC0003DMT400031900	Potato	cytosol	15.57	64.84
PGSC0003DMT400015022	Potato	cytosol	15.57	63.36
AT5G20620.1	Thale cress	cytosol	42.78	59.69
PGSC0003DMT400011939	Potato	cytosol	15.95	54.49
PGSC0003DMT400013321	Potato	cytosol	15.76	53.85
PGSC0003DMT400011737	Potato	cytosol	15.95	46.96
PGSC0003DMT400027156	Potato	cytosol	27.02	37.8
PGSC0003DMT400010171	Potato	cytosol	36.02	35.96
PGSC0003DMT400089149	Potato	cytosol	28.52	33.26
PGSC0003DMT400037401	Potato	cytosol	21.76	30.29
PGSC0003DMT400033485	Potato	cytosol	6.75	17.39

Protein Annotations

MapMan:19.2.2.1.1	Gene3D:3.10.20.90	ProteinID:AAA96951	ProteinID:AAA96951.1	ProteinID:ADO17492	ProteinID:ADO17492.1
ProteinID:CAA77737	ProteinID:CAA77737.1	ProteinID:CAA77738	ProteinID:CAA77738.1	ProteinID:CAA77739	ProteinID:CAA77739.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EMBL:HM439286	InterPro:IPR000626	UniProt:M1B5C3
PFAM:PF00240	EnsemblPlantsGene:PGSC0003DMG400014431	PGSC:PGSC0003DMG400014431	EnsemblPlants:PGSC0003DMT400037403	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	SMART:SM00213	SUPFAM:SSF54236	EMBL:U26831
UniParc:UPI000294F9EF	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EMBL:Z11671
EMBL:Z11672	EMBL:Z11673	:	:	:	:

Description

Polyubiquitin [Source:PGSC_GENE;Acc:PGSC0003DMG400014431]

Coordinates

chr10:-:1388813..1390824

Molecular Weight (calculated)

59700.2 Da

IEP (calculated)

7.904

GRAVY (calculated)

-0.449

Length

533 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRPIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI
501: FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGF

Best Arabidopsis Sequence Match ( AT4G05320.2 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF

Arabidopsis Description

UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.