Factsheet for PGSC0003DMT400015022

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400040141
PGSC0003DMT400040142
PGSC0003DMT400040143
PGSC0003DMT400040144
PGSC0003DMT400040206
PGSC0003DMT400040207
PGSC0003DMT400075691
PGSC0003DMT400077934

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT2G36170.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT2G36170.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT2G36170.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT2G36170.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT2G36170.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT2G36170.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT2G36170.1	PGSC0003DMT400077934	AT3G46090.1	17259181
AT3G52590.1	PGSC0003DMT400075691	AT2G01950.1	19000166
AT3G52590.1	PGSC0003DMT400040141	AT3G46090.1	17259181
AT3G52590.1	PGSC0003DMT400040142	AT3G46090.1	17259181
AT3G52590.1	PGSC0003DMT400040143	AT3G46090.1	17259181
AT3G52590.1	PGSC0003DMT400040144	AT3G46090.1	17259181
AT3G52590.1	PGSC0003DMT400040206	AT3G46090.1	17259181
AT3G52590.1	PGSC0003DMT400040207	AT3G46090.1	17259181
AT3G52590.1	PGSC0003DMT400077934	AT3G46090.1	17259181

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031900	Potato	cytosol	91.6	93.75
PGSC0003DMT400047686	Potato	cytosol	91.6	93.75
PGSC0003DMT400013958	Potato	cytosol	91.6	93.75
GSMUA_Achr5P00970_001	Banana	cytosol	91.6	93.75
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	91.6	93.75
Solyc01g096290.2.1	Tomato	cytosol	91.6	93.75
Solyc03g082570.2.1	Tomato	cytosol	91.6	93.75
Solyc08g083120.2.1	Tomato	cytosol, nucleus	91.6	93.75
PGSC0003DMT400000364	Potato	cytosol	91.6	93.75
KRH64348	Soybean	cytosol, endoplasmic reticulum	90.84	92.97
KRH67947	Soybean	cytosol	90.84	92.97
KRH53585	Soybean	cytosol	90.84	92.97
KRG96204	Soybean	cytosol	90.84	92.97
VIT_08s0007g03030.t01	Wine grape	cytosol	90.84	92.97
TraesCS4A01G306500.1	Wheat	cytosol	90.84	92.25
TraesCS4B01G008400.1	Wheat	cytosol	90.84	92.25
TraesCS4D01G006900.1	Wheat	cytosol	90.84	92.25
AT3G52590.1	Thale cress	cytosol	90.08	92.19
VIT_16s0098g01190.t01	Wine grape	cytosol	90.08	92.19
AT2G36170.1	Thale cress	cytosol	90.08	92.19
Zm00001d005334_P001	Maize	cytosol, plastid	90.08	91.47
EER92591	Sorghum	cytosol	90.08	91.47
EER96363	Sorghum	cytosol	90.08	91.47
TraesCS4B01G233100.1	Wheat	cytosol	90.84	77.27
TraesCS4D01G234300.1	Wheat	cytosol	90.84	75.32
TraesCS4A01G077000.1	Wheat	cytosol	90.84	75.32
KRG99541	Soybean	cytosol	56.49	66.67
PGSC0003DMT400013321	Potato	cytosol	64.12	53.85
PGSC0003DMT400011939	Potato	cytosol	64.12	53.85
PGSC0003DMT400029234	Potato	cytosol	62.6	53.25
PGSC0003DMT400011737	Potato	cytosol	64.12	46.41
PGSC0003DMT400057275	Potato	cytosol	63.36	43.68
PGSC0003DMT400027156	Potato	cytosol	68.7	23.62
PGSC0003DMT400037401	Potato	cytosol	67.94	23.24
PGSC0003DMT400089149	Potato	cytosol	70.23	20.13
PGSC0003DMT400010171	Potato	cytosol	64.12	15.73
PGSC0003DMT400037403	Potato	cytosol	63.36	15.57
PGSC0003DMT400033485	Potato	cytosol	19.08	12.08

Protein Annotations

EntrezGene:102580286	EntrezGene:102586389	EntrezGene:102589413	EntrezGene:102595592	EntrezGene:102600598	MapMan:17.1.2.1.43
Gene3D:2.20.28.70	Gene3D:3.10.20.90	ProteinID:ADO17492	ProteinID:ADO17492.1	ProteinID:CAA77737	ProteinID:CAA77737.1
ProteinID:CAA77738	ProteinID:CAA77738.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
EMBL:HM439286	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	UniProt:M1A5A2	PFAM:PF00240
PFAM:PF01020	EnsemblPlantsGene:PGSC0003DMG400005862	PGSC:PGSC0003DMG400005862	EnsemblPlants:PGSC0003DMT400015022	PRINTS:PR00348	ScanProsite:PS00299
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213
SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI000296A77C	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	EMBL:Z11671	EMBL:Z11672	:	:

Description

60S ribosomal protein L40-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400005862]

Coordinates

chr8:-:5593600..5598601

Molecular Weight (calculated)

15103.6 Da

IEP (calculated)

10.254

GRAVY (calculated)

-0.488

Length

131 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMALARKYN QEKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ VNIIKYIYFP R

Best Arabidopsis Sequence Match ( AT2G35635.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYAIEGG SVLHLVLALR GGLL

Arabidopsis Description

RUB2UBQ7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.