Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G099400.1 | |
| TraesCS3B01G115800.1 | |
| TraesCS3D01G099700.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G008400.1 | Wheat | cytosol | 83.77 | 100.0 |
| GSMUA_Achr5P00970_001 | Banana | cytosol | 82.47 | 99.22 |
| GSMUA_Achr8P07770_001 | Banana | cytosol, unclear | 82.47 | 99.22 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 82.47 | 99.22 |
| PGSC0003DMT400000364 | Potato | cytosol | 82.47 | 99.22 |
| PGSC0003DMT400013958 | Potato | cytosol | 82.47 | 99.22 |
| PGSC0003DMT400031900 | Potato | cytosol | 82.47 | 99.22 |
| PGSC0003DMT400047686 | Potato | cytosol | 82.47 | 99.22 |
| Solyc01g096290.2.1 | Tomato | cytosol | 82.47 | 99.22 |
| Solyc03g082570.2.1 | Tomato | cytosol | 82.47 | 99.22 |
| Solyc08g083120.2.1 | Tomato | cytosol, nucleus | 82.47 | 99.22 |
| EER92591 | Sorghum | cytosol | 82.47 | 98.45 |
| EER96363 | Sorghum | cytosol | 82.47 | 98.45 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 82.47 | 98.45 |
| CDX75065 | Canola | cytosol | 81.82 | 98.44 |
| CDX75066 | Canola | cytosol | 81.82 | 98.44 |
| CDX78108 | Canola | cytosol | 81.82 | 98.44 |
| CDX79660 | Canola | cytosol | 81.82 | 98.44 |
| CDX84153 | Canola | cytosol | 81.82 | 98.44 |
| CDX84576 | Canola | cytosol | 81.82 | 98.44 |
| CDX95351 | Canola | cytosol | 81.82 | 98.44 |
| GSMUA_Achr11P... | Banana | cytosol | 81.82 | 98.44 |
| KRG96204 | Soybean | cytosol | 81.82 | 98.44 |
| KRH53585 | Soybean | cytosol | 81.82 | 98.44 |
| KRH64348 | Soybean | cytosol, endoplasmic reticulum | 81.82 | 98.44 |
| KRH67947 | Soybean | cytosol | 81.82 | 98.44 |
| VIT_08s0007g03030.t01 | Wine grape | cytosol | 81.82 | 98.44 |
| CDX73619 | Canola | cytosol | 81.82 | 97.67 |
| AT2G36170.1 | Thale cress | cytosol | 81.17 | 97.66 |
| AT3G52590.1 | Thale cress | cytosol | 81.17 | 97.66 |
| VIT_16s0098g01190.t01 | Wine grape | cytosol | 81.17 | 97.66 |
| TraesCS7B01G366400.1 | Wheat | cytosol | 48.7 | 97.4 |
| Solyc08g008590.2.1 | Tomato | cytosol, nucleus | 81.82 | 92.65 |
| PGSC0003DMT400015022 | Potato | cytosol | 77.27 | 90.84 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 63.64 | 89.09 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 64.29 | 88.39 |
| TraesCS4B01G218100.1 | Wheat | cytosol | 72.08 | 84.09 |
| TraesCS4B01G218000.1 | Wheat | cytosol | 71.43 | 83.33 |
| TraesCS5B01G260700.1 | Wheat | cytosol | 70.78 | 80.74 |
| TraesCS1B01G241200.1 | Wheat | cytosol | 72.08 | 79.86 |
| TraesCS6B01G176400.1 | Wheat | cytosol | 68.18 | 77.78 |
| TraesCS7B01G390800.1 | Wheat | cytosol | 70.13 | 77.7 |
| TraesCS7B01G390900.1 | Wheat | cytosol | 70.13 | 77.7 |
| TraesCS2B01G480300.1 | Wheat | cytosol | 70.13 | 76.06 |
| TraesCS2B01G480400.1 | Wheat | cytosol | 70.13 | 76.06 |
| TraesCS2B01G480600.1 | Wheat | cytosol | 61.69 | 68.84 |
| TraesCS2B01G480500.1 | Wheat | cytosol | 60.39 | 67.39 |
| KRG99541 | Soybean | cytosol | 48.05 | 66.67 |
| TraesCS5B01G524500.1 | Wheat | cytosol | 42.21 | 65.0 |
| TraesCS5B01G187200.1 | Wheat | cytosol | 59.74 | 64.79 |
| TraesCS5B01G524600.1 | Wheat | cytosol | 57.14 | 64.23 |
| TraesCS5B01G524700.1 | Wheat | cytosol | 55.84 | 61.87 |
| Solyc06g053210.2.1 | Tomato | cytosol | 74.03 | 60.64 |
| TraesCS2B01G107800.1 | Wheat | cytosol | 57.14 | 57.52 |
| TraesCS2B01G107600.1 | Wheat | cytosol | 51.3 | 56.43 |
| TraesCS7B01G366700.1 | Wheat | cytosol | 55.19 | 55.56 |
| TraesCS7B01G366600.1 | Wheat | cytosol | 55.19 | 54.49 |
| TraesCS1B01G130900.1 | Wheat | cytosol | 54.55 | 54.19 |
| TraesCS1B01G425700.1 | Wheat | cytosol | 54.55 | 54.19 |
| TraesCS5B01G222800.1 | Wheat | cytosol | 53.25 | 53.59 |
| TraesCS7B01G413800.1 | Wheat | cytosol | 53.25 | 53.59 |
| TraesCS6B01G176000.1 | Wheat | cytosol | 52.6 | 52.94 |
| TraesCS1B01G182700.1 | Wheat | cytosol | 55.19 | 52.47 |
| TraesCS6B01G115100.1 | Wheat | cytosol | 53.25 | 46.86 |
| TraesCS7B01G366800.1 | Wheat | cytosol | 55.84 | 45.03 |
| CDY00254 | Canola | cytosol | 27.92 | 40.57 |
| TraesCS6B01G164600.1 | Wheat | cytosol | 57.14 | 38.43 |
| TraesCS6B01G164700.2 | Wheat | cytosol | 57.14 | 38.43 |
| TraesCS6B01G148000.2 | Wheat | cytosol | 57.14 | 36.97 |
| TraesCS3B01G572400.1 | Wheat | cytosol, mitochondrion | 33.12 | 33.55 |
| TraesCS3B01G043200.1 | Wheat | cytosol | 30.52 | 33.1 |
| TraesCS6B01G110300.1 | Wheat | cytosol | 55.19 | 31.48 |
| TraesCS7B01G354200.1 | Wheat | cytosol | 57.14 | 31.43 |
| TraesCS7B01G354100.1 | Wheat | cytosol | 57.14 | 28.85 |
| TraesCS7B01G354000.2 | Wheat | cytosol | 57.14 | 28.48 |
| TraesCS6B01G293300.1 | Wheat | plastid | 55.19 | 27.87 |
| TraesCS3B01G567200.1 | Wheat | mitochondrion | 39.61 | 27.23 |
| TraesCS6B01G012500.1 | Wheat | cytosol | 42.21 | 26.53 |
| TraesCS3B01G567300.1 | Wheat | mitochondrion | 36.36 | 25.69 |
| TraesCS7B01G367600.1 | Wheat | cytosol | 49.35 | 25.25 |
| TraesCS3B01G568900.1 | Wheat | mitochondrion | 22.73 | 25.0 |
| TraesCS3B01G567800.1 | Wheat | mitochondrion | 34.42 | 23.66 |
| TraesCS3B01G569000.1 | Wheat | mitochondrion | 33.12 | 22.77 |
| TraesCS4B01G389100.1 | Wheat | endoplasmic reticulum | 31.17 | 22.75 |
| TraesCS3B01G567400.1 | Wheat | cytosol | 38.31 | 19.87 |
| TraesCS4B01G387300.1 | Wheat | cytosol | 40.91 | 19.57 |
| TraesCS3B01G567100.1 | Wheat | nucleus | 37.01 | 19.19 |
| TraesCS3B01G568000.1 | Wheat | cytosol | 37.01 | 19.13 |
| TraesCS3B01G569700.1 | Wheat | cytosol | 38.96 | 18.69 |
| TraesCS3B01G061600.1 | Wheat | cytosol | 29.87 | 18.55 |
| TraesCS7B01G004300.1 | Wheat | cytosol | 22.73 | 16.05 |
| TraesCS7B01G486200.1 | Wheat | cytosol | 28.57 | 15.12 |
| TraesCS1B01G325300.1 | Wheat | cytosol | 36.36 | 14.11 |
| TraesCS5B01G386500.1 | Wheat | nucleus | 28.57 | 11.4 |
| TraesCS7B01G044300.1 | Wheat | cytosol | 3.25 | 7.94 |
| TraesCS2B01G426500.1 | Wheat | cytosol | 7.79 | 7.84 |
| TraesCS5B01G080200.1 | Wheat | cytosol | 7.79 | 7.84 |
| TraesCS6B01G140600.1 | Wheat | cytosol | 7.79 | 7.84 |
| TraesCS6B01G164900.1 | Wheat | cytosol | 7.79 | 7.84 |
| TraesCS7B01G367700.1 | Wheat | cytosol | 7.79 | 7.84 |
| TraesCS7B01G381800.1 | Wheat | cytosol | 7.79 | 7.84 |
| TraesCS5B01G387000.1 | Wheat | cytosol | 28.57 | 6.43 |
| TraesCS5B01G386900.1 | Wheat | cytosol | 1.3 | 0.51 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR038587 | InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 |
| PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | SMART:SM00213 | SMART:SM01377 |
| SUPFAM:SSF54236 | EnsemblPlantsGene:TraesCS4B01G233100 | EnsemblPlants:TraesCS4B01G233100.1 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | TIGR:cd01803 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr4B:+:484580114..484582035
Molecular Weight (calculated)
17478.6 Da
IEP (calculated)
10.351
GRAVY (calculated)
-0.373
Length
154 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGEYLLL SFPFLFPPAA VANICFVPAG IPPDQQRLIF AGKQLEDGRT LADYNIQKES TLHLVLRLRG
101: GIIEPSLQAL ARKYNQEKMI CRKCYARLHP RAVNCRKKKC GHSNQLRPKK KIKN
101: GIIEPSLQAL ARKYNQEKMI CRKCYARLHP RAVNCRKKKC GHSNQLRPKK KIKN
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.