Factsheet for TraesCS2B01G107800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G093300.1	Wheat	cytosol	90.85	94.56
TraesCS2D01G092200.1	Wheat	cytosol	92.81	92.21
TraesCS2B01G107600.1	Wheat	cytosol	78.43	85.71
TraesCS7B01G366400.1	Wheat	cytosol	34.64	68.83
TraesCS4B01G008400.1	Wheat	cytosol	57.52	68.22
TraesCS4B01G218100.1	Wheat	cytosol	58.17	67.42
TraesCS4B01G218000.1	Wheat	cytosol	57.52	66.67
TraesCS6B01G176400.1	Wheat	cytosol	58.82	66.67
TraesCS5B01G260700.1	Wheat	cytosol	58.17	65.93
TraesCS1B01G241200.1	Wheat	cytosol	59.48	65.47
TraesCS7B01G390900.1	Wheat	cytosol	58.82	64.75
TraesCS7B01G390800.1	Wheat	cytosol	58.82	64.75
HORVU4Hr1G061980.1	Barley	cytosol	50.33	64.17
TraesCS2B01G480300.1	Wheat	cytosol	56.86	61.27
TraesCS2B01G480400.1	Wheat	cytosol	56.86	61.27
KXG39742	Sorghum	cytosol	54.9	58.74
TraesCS2B01G480600.1	Wheat	cytosol	51.63	57.25
TraesCS4B01G233100.1	Wheat	cytosol	57.52	57.14
TraesCS2B01G480500.1	Wheat	cytosol	50.98	56.52
TraesCS5B01G524600.1	Wheat	cytosol	50.33	56.2
TraesCS5B01G187200.1	Wheat	cytosol	50.33	54.23
TraesCS5B01G524700.1	Wheat	cytosol	48.37	53.24
TraesCS5B01G524500.1	Wheat	cytosol	33.99	52.0
TraesCS7B01G366700.1	Wheat	cytosol	39.22	39.22
TraesCS1B01G425700.1	Wheat	cytosol	39.22	38.71
TraesCS1B01G130900.1	Wheat	cytosol	39.22	38.71
TraesCS7B01G366600.1	Wheat	cytosol	39.22	38.46
TraesCS6B01G176000.1	Wheat	cytosol	37.91	37.91
TraesCS7B01G413800.1	Wheat	cytosol	37.25	37.25
TraesCS5B01G222800.1	Wheat	cytosol	37.25	37.25
TraesCS1B01G182700.1	Wheat	cytosol	39.22	37.04
TraesCS6B01G115100.1	Wheat	cytosol	38.56	33.71
TraesCS7B01G366800.1	Wheat	cytosol	39.87	31.94
TraesCS6B01G164700.2	Wheat	cytosol	42.48	28.38
TraesCS6B01G164600.1	Wheat	cytosol	42.48	28.38
TraesCS6B01G148000.2	Wheat	cytosol	42.48	27.31
TraesCS3B01G572400.1	Wheat	cytosol, mitochondrion	26.14	26.32
TraesCS3B01G043200.1	Wheat	cytosol	22.88	24.65
TraesCS7B01G354200.1	Wheat	cytosol	42.48	23.21
TraesCS6B01G110300.1	Wheat	cytosol	39.87	22.59
TraesCS7B01G354000.2	Wheat	cytosol	43.14	21.36
TraesCS7B01G354100.1	Wheat	cytosol	42.48	21.31
TraesCS6B01G012500.1	Wheat	cytosol	32.68	20.41
TraesCS3B01G567200.1	Wheat	mitochondrion	29.41	20.09
TraesCS6B01G293300.1	Wheat	plastid	39.22	19.67
TraesCS3B01G567300.1	Wheat	mitochondrion	26.8	18.81
TraesCS7B01G367600.1	Wheat	cytosol	36.6	18.6
TraesCS4B01G389100.1	Wheat	endoplasmic reticulum	25.49	18.48
TraesCS3B01G567800.1	Wheat	mitochondrion	26.8	18.3
TraesCS3B01G568900.1	Wheat	mitochondrion	16.34	17.86
TraesCS3B01G061600.1	Wheat	cytosol	28.76	17.74
TraesCS3B01G569000.1	Wheat	mitochondrion	24.18	16.52
TraesCS3B01G567400.1	Wheat	cytosol	29.41	15.15
TraesCS4B01G387300.1	Wheat	cytosol	30.07	14.29
TraesCS7B01G004300.1	Wheat	cytosol	20.26	14.22
TraesCS3B01G567100.1	Wheat	nucleus	27.45	14.14
TraesCS3B01G569700.1	Wheat	cytosol	29.41	14.02
TraesCS3B01G568000.1	Wheat	cytosol	26.14	13.42
TraesCS7B01G486200.1	Wheat	cytosol	20.91	11.0
TraesCS1B01G325300.1	Wheat	cytosol	27.45	10.58
TraesCS5B01G386500.1	Wheat	nucleus	22.88	9.07
TraesCS6B01G164900.1	Wheat	cytosol	7.19	7.19
TraesCS6B01G140600.1	Wheat	cytosol	7.19	7.19
TraesCS7B01G367700.1	Wheat	cytosol	7.19	7.19
TraesCS7B01G381800.1	Wheat	cytosol	7.19	7.19
TraesCS2B01G426500.1	Wheat	cytosol	7.19	7.19
TraesCS5B01G080200.1	Wheat	cytosol	7.19	7.19
TraesCS7B01G044300.1	Wheat	cytosol	2.61	6.35
TraesCS5B01G387000.1	Wheat	cytosol	25.49	5.7
TraesCS5B01G386900.1	Wheat	cytosol	1.31	0.51

Protein Annotations

Gene3D:2.20.28.70	Gene3D:3.10.20.90	MapMan:35.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	PFAM:PF00240	PFAM:PF01020
PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213
SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	EnsemblPlantsGene:TraesCS2B01G107800	EnsemblPlants:TraesCS2B01G107800.1	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:68756608..68757369

Molecular Weight (calculated)

17015.6 Da

IEP (calculated)

10.322

GRAVY (calculated)

-0.637

Length

153 amino acids

Sequence
(BLAST)

001: MQIFVKTITG QTLTLEVKGT DTVDAIKAQI QDKQGIAGTA SEDPHQLPSL VFAGKQLDEE DGRTLADYGI GKESTLHHVL GLRGGFRQRS WYPHINPTLL
101: ALALRYNENK MICRKCYGRL PPGATNCRKK KCGHTNDLRP KKRFDGRAGL RGK

Best Arabidopsis Sequence Match ( AT2G36170.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.