Factsheet for TraesCS5B01G187200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G196400.1	Wheat	cytosol	97.89	97.2
TraesCS5D01G194700.1	Wheat	cytosol	94.37	93.71
HORVU5Hr1G056730.1	Barley	cytosol, plastid	93.66	79.17
TraesCS7B01G366400.1	Wheat	cytosol	42.25	77.92
TraesCS1B01G241200.1	Wheat	cytosol	71.13	72.66
TraesCS5B01G260700.1	Wheat	cytosol	68.31	71.85
TraesCS4B01G008400.1	Wheat	cytosol	64.79	71.32
TraesCS2B01G480600.1	Wheat	cytosol	69.01	71.01
TraesCS2B01G480300.1	Wheat	cytosol	69.01	69.01
TraesCS2B01G480400.1	Wheat	cytosol	69.01	69.01
TraesCS6B01G176400.1	Wheat	cytosol	65.49	68.89
TraesCS7B01G390800.1	Wheat	cytosol	66.9	68.35
TraesCS7B01G390900.1	Wheat	cytosol	66.9	68.35
TraesCS4B01G218000.1	Wheat	cytosol	63.38	68.18
TraesCS4B01G218100.1	Wheat	cytosol	63.38	68.18
TraesCS2B01G480500.1	Wheat	cytosol	66.2	68.12
TraesCS4B01G233100.1	Wheat	cytosol	64.79	59.74
TraesCS5B01G524600.1	Wheat	cytosol	52.11	54.01
TraesCS5B01G524500.1	Wheat	cytosol	38.03	54.0
TraesCS5B01G524700.1	Wheat	cytosol	51.41	52.52
TraesCS2B01G107800.1	Wheat	cytosol	54.23	50.33
TraesCS2B01G107600.1	Wheat	cytosol	49.3	50.0
TraesCS7B01G366700.1	Wheat	cytosol	49.3	45.75
TraesCS1B01G130900.1	Wheat	cytosol	49.3	45.16
TraesCS1B01G425700.1	Wheat	cytosol	49.3	45.16
TraesCS7B01G366600.1	Wheat	cytosol	49.3	44.87
TraesCS7B01G413800.1	Wheat	cytosol	47.89	44.44
TraesCS5B01G222800.1	Wheat	cytosol	47.89	44.44
TraesCS6B01G176000.1	Wheat	cytosol	47.18	43.79
TraesCS1B01G182700.1	Wheat	cytosol	49.3	43.21
TraesCS6B01G115100.1	Wheat	cytosol	47.89	38.86
TraesCS7B01G366800.1	Wheat	cytosol	50.7	37.7
TraesCS6B01G164700.2	Wheat	cytosol	52.82	32.75
TraesCS6B01G164600.1	Wheat	cytosol	52.82	32.75
TraesCS6B01G148000.2	Wheat	cytosol	52.82	31.51
TraesCS3B01G572400.1	Wheat	cytosol, mitochondrion	30.28	28.29
TraesCS3B01G043200.1	Wheat	cytosol	27.46	27.46
TraesCS6B01G110300.1	Wheat	cytosol	52.11	27.41
TraesCS7B01G354200.1	Wheat	cytosol	52.82	26.79
TraesCS7B01G354100.1	Wheat	cytosol	52.82	24.59
TraesCS7B01G354000.2	Wheat	cytosol	52.82	24.27
TraesCS6B01G012500.1	Wheat	cytosol	40.85	23.67
TraesCS6B01G293300.1	Wheat	plastid	49.3	22.95
TraesCS3B01G567200.1	Wheat	mitochondrion	35.92	22.77
TraesCS3B01G567300.1	Wheat	mitochondrion	34.51	22.48
TraesCS7B01G367600.1	Wheat	cytosol	45.77	21.59
TraesCS3B01G567800.1	Wheat	mitochondrion	33.1	20.98
TraesCS4B01G389100.1	Wheat	endoplasmic reticulum	30.99	20.85
TraesCS3B01G568900.1	Wheat	mitochondrion	19.01	19.29
TraesCS3B01G569000.1	Wheat	mitochondrion	30.28	19.2
TraesCS4B01G387300.1	Wheat	cytosol	40.85	18.01
TraesCS3B01G567400.1	Wheat	cytosol	36.62	17.51
TraesCS3B01G568000.1	Wheat	cytosol	35.92	17.11
TraesCS3B01G567100.1	Wheat	nucleus	34.51	16.5
TraesCS3B01G569700.1	Wheat	cytosol	36.62	16.2
TraesCS3B01G061600.1	Wheat	cytosol	27.46	15.73
TraesCS7B01G486200.1	Wheat	cytosol	31.69	15.46
TraesCS7B01G004300.1	Wheat	cytosol	21.83	14.22
TraesCS1B01G325300.1	Wheat	cytosol	35.92	12.85
TraesCS5B01G386500.1	Wheat	nucleus	30.99	11.4
TraesCS6B01G164900.1	Wheat	cytosol	9.86	9.15
TraesCS2B01G426500.1	Wheat	cytosol	9.86	9.15
TraesCS6B01G140600.1	Wheat	cytosol	9.86	9.15
TraesCS7B01G367700.1	Wheat	cytosol	9.86	9.15
TraesCS7B01G381800.1	Wheat	cytosol	9.86	9.15
TraesCS5B01G080200.1	Wheat	cytosol	9.86	9.15
TraesCS7B01G044300.1	Wheat	cytosol	3.52	7.94
TraesCS5B01G387000.1	Wheat	cytosol	30.99	6.43
TraesCS5B01G386900.1	Wheat	cytosol	1.41	0.51

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	PFAM:PF00240	PFAM:PF01020
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF229	InterPro:Ribosomal_L40e
InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	EnsemblPlantsGene:TraesCS5B01G187200
EnsemblPlants:TraesCS5B01G187200.1	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg

Description

No Description!

Coordinates

chr5B:+:339424475..339428059

Molecular Weight (calculated)

15995.7 Da

IEP (calculated)

10.507

GRAVY (calculated)

-0.724

Length

142 amino acids

Sequence
(BLAST)

001: MQIFVKTPSG KTITLEVEGG HDIAGVKARI HDKEDVPPDQ QRLIFAGKQL EEGHTLADYN IQKESTLHLV LRLHGGRGGT GKGGTYPKIE PNLLQLALKY
101: RQLKLVCRKC YARLPVRSAN CRKKKCGHCN ETRTKKKLKP RE

Best Arabidopsis Sequence Match ( AT2G36170.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.