Factsheet for TraesCS5D01G194700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G196400.1	Wheat	cytosol	95.1	95.1
TraesCS5B01G187200.1	Wheat	cytosol	93.71	94.37
HORVU5Hr1G056730.1	Barley	cytosol, plastid	92.31	78.57
TraesCS7D01G454100.1	Wheat	cytosol, golgi, unclear	41.96	77.92
TraesCS4D01G218300.1	Wheat	cytosol	61.54	71.54
TraesCS4D01G006900.1	Wheat	cytosol	64.34	71.32
TraesCS5D01G269800.1	Wheat	cytosol	67.13	71.11
TraesCS2D01G459200.1	Wheat	cytosol	67.83	70.29
TraesCS2D01G580700.1	Wheat	cytosol	67.83	69.78
TraesCS1D01G228700.1	Wheat	cytosol	67.13	69.06
TraesCS6D01G137400.1	Wheat	cytosol	65.03	68.89
TraesCS7D01G474200.1	Wheat	cytosol	66.43	68.35
TraesCS7D01G474300.1	Wheat	cytosol	65.73	67.63
TraesCS2D01G458600.1	Wheat	cytosol	67.13	67.61
TraesCS2D01G459000.1	Wheat	cytosol	65.03	67.39
TraesCS2D01G459100.1	Wheat	cytosol	65.03	67.39
TraesCS2D01G458700.1	Wheat	cytosol	65.73	66.2
TraesCS4D01G218400.1	Wheat	cytosol	62.94	59.6
TraesCS4D01G234300.1	Wheat	cytosol	64.34	58.23
TraesCS2D01G092200.1	Wheat	cytosol	55.24	51.3
TraesCS2D01G092300.1	Wheat	cytosol	51.75	50.68
TraesCS7D01G442900.1	Wheat	cytosol	48.25	45.1
TraesCS6D01G248600.1	Wheat	cytosol	48.25	44.81
TraesCS1D01G405400.1	Wheat	cytosol	48.25	44.52
TraesCS1D01G109800.1	Wheat	cytosol	48.25	44.52
TraesCS7D01G494400.1	Wheat	cytosol	46.85	43.79
TraesCS5D01G231400.1	Wheat	cytosol	46.85	43.79
TraesCS7D01G453100.1	Wheat	cytosol	46.85	43.23
TraesCS7D01G143000.1	Wheat	cytosol	46.85	43.23
TraesCS1D01G174700.1	Wheat	cytosol	48.25	42.59
TraesCS1D01G206100.1	Wheat	cytosol	44.76	41.29
TraesCS6D01G136800.1	Wheat	cytosol	41.26	40.69
TraesCS1D01G206400.1	Wheat	cytosol	44.06	40.65
TraesCS6D01G109600.1	Wheat	cytosol	52.45	32.75
TraesCS2D01G405500.1	Wheat	cytosol	51.75	32.46
TraesCS7D01G443100.1	Wheat	cytosol	51.75	32.31
TraesCS7D01G442700.1	Wheat	cytosol, nucleus	52.45	24.59
TraesCS3D01G510800.1	Wheat	cytosol	37.06	23.66
TraesCS3D01G510400.1	Wheat	mitochondrion	35.66	22.77
TraesCS6D01G125600.1	Wheat	cytosol	51.75	22.42
TraesCS3D01G510600.1	Wheat	cytosol	34.27	21.88
TraesCS3D01G510500.1	Wheat	mitochondrion	16.78	21.05
TraesCS1D01G427100.1	Wheat	cytosol	32.17	20.26
TraesCS3D01G511200.1	Wheat	cytosol	29.37	18.92
TraesCS3D01G039700.1	Wheat	cytosol	27.97	17.7
TraesCS3D01G511000.1	Wheat	cytosol	36.36	17.57
TraesCS3D01G510700.1	Wheat	cytosol, nucleus, plastid	36.36	17.57
TraesCS3D01G510300.2	Wheat	nucleus	35.66	17.17
TraesCS3D01G510900.1	Wheat	nucleus	34.97	16.78
TraesCS7D01G100100.1	Wheat	cytosol	27.27	16.25
TraesCS3D01G511500.1	Wheat	nucleus	32.87	15.72
TraesCS3D01G511900.1	Wheat	mitochondrion	35.66	15.45
TraesCS5D01G391800.1	Wheat	mitochondrion	30.77	15.17
TraesCS3D01G510200.1	Wheat	cytosol	23.78	15.11
TraesCS7D01G024600.1	Wheat	cytosol, mitochondrion	33.57	13.08
TraesCS5D01G087500.1	Wheat	cytosol	19.58	12.23
TraesCS7D01G466600.1	Wheat	cytosol	10.49	9.8
TraesCS2D01G474700.1	Wheat	cytosol	4.9	9.09
TraesCS1D01G314000.1	Wheat	cytosol	35.66	8.64

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	PFAM:PF00240	PFAM:PF01020
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF229	InterPro:Ribosomal_L40e
InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	EnsemblPlantsGene:TraesCS5D01G194700
EnsemblPlants:TraesCS5D01G194700.1	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	SEG:seg

Description

No Description!

Coordinates

chr5D:+:298691549..298694931

Molecular Weight (calculated)

16104.7 Da

IEP (calculated)

10.537

GRAVY (calculated)

-0.770

Length

143 amino acids

Sequence
(BLAST)

001: MQIFVKTPSG KTITLEVEGG HGIADVKARI HDKEDVPPDQ QRLIFAGKQL EEGHTVADYN IQKESTLHLV LRLHGGRGGT GKGGTYPPIE PNLLQLALKY
101: RQRKLICRKC YARLPLRSAN CRKKKCGHCN ETRTKKKLKP RDP

Best Arabidopsis Sequence Match ( AT2G36170.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.