Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G480500.1 | Wheat | cytosol | 93.48 | 93.48 |
| TraesCS2A01G458600.1 | Wheat | cytosol | 92.03 | 91.37 |
| TraesCS2D01G459000.1 | Wheat | cytosol | 88.41 | 88.41 |
| TraesCS2D01G580700.1 | Wheat | cytosol | 81.16 | 80.58 |
| TraesCS2D01G459200.1 | Wheat | cytosol | 79.71 | 79.71 |
| TraesCS7D01G454100.1 | Wheat | cytosol, golgi, unclear | 44.2 | 79.22 |
| TraesCS4D01G218300.1 | Wheat | cytosol | 65.94 | 73.98 |
| TraesCS5D01G269800.1 | Wheat | cytosol | 71.01 | 72.59 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 67.39 | 72.09 |
| TraesCS6D01G137400.1 | Wheat | cytosol | 68.84 | 70.37 |
| TraesCS2D01G458600.1 | Wheat | cytosol | 71.74 | 69.72 |
| TraesCS1D01G228700.1 | Wheat | cytosol | 69.57 | 69.06 |
| TraesCS7D01G474200.1 | Wheat | cytosol | 68.12 | 67.63 |
| TraesCS7D01G474300.1 | Wheat | cytosol | 67.39 | 66.91 |
| TraesCS2D01G458700.1 | Wheat | cytosol | 68.84 | 66.9 |
| TraesCS5D01G194700.1 | Wheat | cytosol | 67.39 | 65.03 |
| TraesCS4D01G218400.1 | Wheat | cytosol | 66.67 | 60.93 |
| TraesCS4D01G234300.1 | Wheat | cytosol | 67.39 | 58.86 |
| TraesCS2D01G092300.1 | Wheat | cytosol | 56.52 | 53.42 |
| TraesCS2D01G092200.1 | Wheat | cytosol | 57.25 | 51.3 |
| TraesCS7D01G442900.1 | Wheat | cytosol | 51.45 | 46.41 |
| TraesCS6D01G248600.1 | Wheat | cytosol | 51.45 | 46.1 |
| TraesCS1D01G405400.1 | Wheat | cytosol | 50.72 | 45.16 |
| TraesCS1D01G109800.1 | Wheat | cytosol | 50.72 | 45.16 |
| TraesCS5D01G231400.1 | Wheat | cytosol | 49.28 | 44.44 |
| TraesCS7D01G494400.1 | Wheat | cytosol | 49.28 | 44.44 |
| TraesCS7D01G143000.1 | Wheat | cytosol | 49.28 | 43.87 |
| TraesCS7D01G453100.1 | Wheat | cytosol | 49.28 | 43.87 |
| TraesCS1D01G206100.1 | Wheat | cytosol | 48.55 | 43.23 |
| TraesCS1D01G174700.1 | Wheat | cytosol | 50.72 | 43.21 |
| TraesCS6D01G136800.1 | Wheat | cytosol | 43.48 | 41.38 |
| TraesCS1D01G206400.1 | Wheat | cytosol | 45.65 | 40.65 |
| TraesCS6D01G109600.1 | Wheat | cytosol | 55.8 | 33.62 |
| TraesCS2D01G405500.1 | Wheat | cytosol | 55.07 | 33.33 |
| TraesCS7D01G443100.1 | Wheat | cytosol | 55.07 | 33.19 |
| TraesCS7D01G442700.1 | Wheat | cytosol, nucleus | 55.8 | 25.25 |
| TraesCS3D01G510800.1 | Wheat | cytosol | 38.41 | 23.66 |
| TraesCS3D01G510400.1 | Wheat | mitochondrion | 37.68 | 23.21 |
| TraesCS6D01G125600.1 | Wheat | cytosol | 55.07 | 23.03 |
| TraesCS1D01G427100.1 | Wheat | cytosol | 36.96 | 22.47 |
| TraesCS3D01G510600.1 | Wheat | cytosol | 36.23 | 22.32 |
| TraesCS3D01G510500.1 | Wheat | mitochondrion | 17.39 | 21.05 |
| TraesCS3D01G039700.1 | Wheat | cytosol | 33.33 | 20.35 |
| TraesCS3D01G511200.1 | Wheat | cytosol | 31.88 | 19.82 |
| TraesCS3D01G511000.1 | Wheat | cytosol | 39.86 | 18.58 |
| TraesCS3D01G510700.1 | Wheat | cytosol, nucleus, plastid | 38.41 | 17.91 |
| TraesCS3D01G510300.2 | Wheat | nucleus | 38.41 | 17.85 |
| TraesCS7D01G100100.1 | Wheat | cytosol | 30.43 | 17.5 |
| TraesCS3D01G510900.1 | Wheat | nucleus | 36.96 | 17.11 |
| TraesCS3D01G510200.1 | Wheat | cytosol | 27.54 | 16.89 |
| TraesCS3D01G511900.1 | Wheat | mitochondrion | 37.68 | 15.76 |
| TraesCS3D01G511500.1 | Wheat | nucleus | 34.06 | 15.72 |
| TraesCS5D01G391800.1 | Wheat | mitochondrion | 32.61 | 15.52 |
| TraesCS7D01G024600.1 | Wheat | cytosol, mitochondrion | 36.96 | 13.9 |
| TraesCS5D01G087500.1 | Wheat | cytosol | 19.57 | 11.79 |
| TraesCS2D01G474700.1 | Wheat | cytosol | 6.52 | 11.69 |
| TraesCS7D01G466600.1 | Wheat | cytosol | 11.59 | 10.46 |
| TraesCS1D01G314000.1 | Wheat | cytosol | 37.68 | 8.81 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR038587 | InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 |
| PRINTS:PR00348 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd |
| SMART:SM00213 | SMART:SM01377 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | EnsemblPlantsGene:TraesCS2D01G459100 | EnsemblPlants:TraesCS2D01G459100.1 |
| InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | : | : | : |
Description
No Description!
Coordinates
chr2D:-:565758667..565761005
Molecular Weight (calculated)
15886.5 Da
IEP (calculated)
10.467
GRAVY (calculated)
-0.651
Length
138 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTA ETMTLEVESF ATVHSVKAKI HDKEGIEPDQ QRLIFAGKQL DDGRTLADYS IHKESTLHLT LRLVGGGKGG YYPTRMEPNL RMLALKYRQH
101: RLVCRKCYAR LPLRSANCRK KKCGHSNDIR PKEKLRPH
101: RLVCRKCYAR LPLRSANCRK KKCGHSNDIR PKEKLRPH
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.