Factsheet for TraesCS4D01G218300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G454100.1	Wheat	cytosol, golgi, unclear	59.35	94.81
TraesCS4A01G086400.1	Wheat	cytosol	96.75	90.15
TraesCS4B01G218000.1	Wheat	cytosol	96.75	90.15
GSMUA_Achr11P...	Banana	cytosol	55.28	83.95
TraesCS4D01G006900.1	Wheat	cytosol	86.99	82.95
TraesCS5D01G269800.1	Wheat	cytosol	81.3	74.07
TraesCS2D01G458600.1	Wheat	cytosol	85.37	73.94
TraesCS4D01G218400.1	Wheat	cytosol	90.24	73.51
TraesCS6D01G137400.1	Wheat	cytosol	80.49	73.33
TraesCS2D01G458700.1	Wheat	cytosol	83.74	72.54
TraesCS7D01G474200.1	Wheat	cytosol	80.49	71.22
TraesCS1D01G228700.1	Wheat	cytosol	80.49	71.22
TraesCS2D01G580700.1	Wheat	cytosol	80.49	71.22
TraesCS7D01G474300.1	Wheat	cytosol	79.67	70.5
TraesCS4D01G234300.1	Wheat	cytosol	86.99	67.72
TraesCS2D01G459000.1	Wheat	cytosol	74.8	66.67
TraesCS2D01G459100.1	Wheat	cytosol	73.98	65.94
TraesCS2D01G459200.1	Wheat	cytosol	72.36	64.49
TraesCS5D01G194700.1	Wheat	cytosol	71.54	61.54
HORVU4Hr1G061900.2	Barley	nucleus, plastid	89.43	57.59
TraesCS2D01G092300.1	Wheat	cytosol	67.48	56.85
TraesCS2D01G092200.1	Wheat	cytosol	68.29	54.55
TraesCS7D01G442900.1	Wheat	cytosol	67.48	54.25
TraesCS6D01G248600.1	Wheat	cytosol	67.48	53.9
TraesCS1D01G405400.1	Wheat	cytosol	67.48	53.55
TraesCS1D01G109800.1	Wheat	cytosol	67.48	53.55
TraesCS5D01G231400.1	Wheat	cytosol	65.04	52.29
TraesCS7D01G494400.1	Wheat	cytosol	65.04	52.29
TraesCS1D01G174700.1	Wheat	cytosol	67.48	51.23
TraesCS7D01G453100.1	Wheat	cytosol	64.23	50.97
TraesCS7D01G143000.1	Wheat	cytosol	64.23	50.97
TraesCS1D01G206100.1	Wheat	cytosol	63.41	50.32
TraesCS1D01G206400.1	Wheat	cytosol	60.98	48.39
TraesCS6D01G136800.1	Wheat	cytosol	56.91	48.28
TraesCS6D01G109600.1	Wheat	cytosol	69.92	37.55
TraesCS2D01G405500.1	Wheat	cytosol	69.11	37.28
TraesCS7D01G443100.1	Wheat	cytosol	69.11	37.12
TraesCS7D01G442700.1	Wheat	cytosol, nucleus	69.92	28.2
TraesCS3D01G510800.1	Wheat	cytosol	50.41	27.68
TraesCS3D01G510400.1	Wheat	mitochondrion	47.97	26.34
TraesCS6D01G125600.1	Wheat	cytosol	69.11	25.76
TraesCS3D01G510600.1	Wheat	cytosol	46.34	25.45
TraesCS3D01G510500.1	Wheat	mitochondrion	22.76	24.56
TraesCS3D01G511200.1	Wheat	cytosol	41.46	22.97
TraesCS1D01G427100.1	Wheat	cytosol	42.28	22.91
TraesCS3D01G039700.1	Wheat	cytosol	39.84	21.68
TraesCS3D01G511000.1	Wheat	cytosol	47.97	19.93
TraesCS3D01G510300.2	Wheat	nucleus	47.97	19.87
TraesCS3D01G510700.1	Wheat	cytosol, nucleus, plastid	47.15	19.59
TraesCS3D01G510900.1	Wheat	nucleus	47.15	19.46
TraesCS7D01G100100.1	Wheat	cytosol	37.4	19.17
TraesCS3D01G510200.1	Wheat	cytosol	34.96	19.11
TraesCS3D01G511500.1	Wheat	nucleus	43.09	17.73
TraesCS3D01G511900.1	Wheat	mitochondrion	47.15	17.58
TraesCS7D01G024600.1	Wheat	cytosol, mitochondrion	47.97	16.08
TraesCS5D01G391800.1	Wheat	mitochondrion	37.4	15.86
TraesCS5D01G087500.1	Wheat	cytosol	25.2	13.54
TraesCS2D01G474700.1	Wheat	cytosol	6.5	10.39
TraesCS1D01G314000.1	Wheat	cytosol	45.53	9.49
TraesCS7D01G466600.1	Wheat	cytosol	10.57	8.5

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	PFAM:PF00240	PFAM:PF01020
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e
InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377	SUPFAM:SSF54236	SUPFAM:SSF57829	EnsemblPlantsGene:TraesCS4D01G218300
EnsemblPlants:TraesCS4D01G218300.1	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	TIGR:cd01803

Description

No Description!

Coordinates

chr4D:-:373856014..373858056

Molecular Weight (calculated)

13830.0 Da

IEP (calculated)

10.251

GRAVY (calculated)

-0.575

Length

123 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDAVKAKI QDKEGIPPDQ QRLIFTGKQL DDGRTLADYN IQKESTLHLV LRLRGGGCMI EPNLKALAQK YNQGKLICRK
101: CYSRLPPRAK SCRKKKCGHS NQV

Best Arabidopsis Sequence Match ( AT2G36170.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.