Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G040980.1 | Barley | cytosol | 24.61 | 94.0 |
| TraesCS4B01G218000.1 | Wheat | cytosol | 63.87 | 92.42 |
| TraesCS4A01G086400.1 | Wheat | cytosol | 63.87 | 92.42 |
| TraesCS4D01G218300.1 | Wheat | cytosol | 57.59 | 89.43 |
| GSMUA_Achr11P... | Banana | cytosol | 34.55 | 81.48 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 45.55 | 79.09 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 43.98 | 75.0 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 52.36 | 71.43 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 52.36 | 66.23 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 41.36 | 65.83 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 52.36 | 56.5 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 45.55 | 51.79 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 40.31 | 50.33 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 43.98 | 46.41 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 43.46 | 46.37 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 41.36 | 43.41 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 37.17 | 43.29 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 40.84 | 41.49 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 41.36 | 41.36 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 41.88 | 40.61 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 59.16 | 40.36 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 41.88 | 39.41 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 41.88 | 39.41 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 31.41 | 38.71 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 43.46 | 36.24 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 28.27 | 35.29 |
| HORVU6Hr1G014970.1 | Barley | plastid | 43.46 | 34.58 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 34.55 | 33.33 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 43.46 | 33.07 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 32.98 | 32.64 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 39.79 | 31.41 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 41.88 | 29.85 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 43.98 | 26.42 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 45.03 | 26.14 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 29.84 | 25.33 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 43.46 | 24.56 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 47.12 | 22.9 |
| HORVU1Hr1G043930.8 | Barley | plastid | 46.07 | 20.9 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 30.89 | 20.14 |
| HORVU6Hr1G026260.1 | Barley | cytosol, extracellular, plasma membrane | 48.69 | 19.96 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 18.85 | 19.15 |
| HORVU7Hr1G103170.9 | Barley | cytosol, plasma membrane | 48.17 | 17.26 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 16.23 | 16.15 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 27.75 | 13.38 |
| HORVU6Hr1G026280.2 | Barley | plastid | 25.65 | 12.1 |
| HORVU7Hr1G107010.1 | Barley | cytosol | 6.28 | 7.84 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 26.18 | 7.31 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | UniProt:A0A287PB32 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU4Hr1G061900 | EnsemblPlants:HORVU4Hr1G061900.2 | InterPro:IPR000626 | InterPro:IPR038587 |
| InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 | PFscan:PS50053 | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd | SMART:SM00213 | SMART:SM01377 | SUPFAM:SSF54236 |
| SUPFAM:SSF57829 | UniParc:UPI000B4813A4 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg |
Description
No Description!
Coordinates
chrchr4H:-:520102775..520104922
Molecular Weight (calculated)
21714.3 Da
IEP (calculated)
10.934
GRAVY (calculated)
-0.872
Length
191 amino acids
Sequence
(BLAST)
(BLAST)
001: PAHAAGGRGR RLYKDDPTLP SPVPTAASRV QTTHHRLPPP FSSESSRRRK AKRRERRADE MQIFVKTLTG KTITLEVVSS DTIDNVKAKI QDKEGIHPDQ
101: QRLIFAGKQL DDDRTLADYN IQKESTIHLV LRLRGGACLI EPNLKALAQK YNQGKLIFCR CYSRLPPKAK SCRKKKCGHS NQLRSKKKCR Y
101: QRLIFAGKQL DDDRTLADYN IQKESTIHLV LRLRGGACLI EPNLKALAQK YNQGKLIFCR CYSRLPPKAK SCRKKKCGHS NQLRSKKKCR Y
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.