Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G107010.1 | Barley | cytosol | 28.14 | 98.04 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 41.84 | 97.38 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 33.02 | 97.24 |
| Os04t0628100-01 | Rice | plasma membrane | 70.17 | 95.41 |
| TraesCS2A01G408500.1 | Wheat | cytosol | 40.71 | 94.76 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 33.02 | 93.62 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 56.85 | 92.1 |
| HORVU4Hr1G040980.1 | Barley | cytosol | 8.63 | 92.0 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 32.83 | 90.67 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 42.21 | 89.64 |
| CDY39163 | Canola | cytosol | 16.51 | 87.13 |
| KXG29531 | Sorghum | cytosol | 70.54 | 82.28 |
| HORVU6Hr1G026260.1 | Barley | cytosol, extracellular, plasma membrane | 70.17 | 80.26 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 22.51 | 78.43 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 15.38 | 73.21 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 42.96 | 72.01 |
| HORVU4Hr1G001170.5 | Barley | cytosol | 14.82 | 71.82 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 52.35 | 70.99 |
| Solyc11g005670.1.1 | Tomato | cytosol, nucleus | 70.54 | 70.41 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 42.78 | 67.46 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 24.2 | 65.48 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 22.33 | 65.38 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 22.33 | 63.3 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 22.51 | 62.83 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 16.32 | 62.14 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 27.77 | 61.16 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 23.26 | 61.08 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 23.26 | 61.08 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 16.14 | 56.95 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 20.45 | 55.05 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 23.08 | 54.67 |
| HORVU6Hr1G014970.1 | Barley | plastid | 24.58 | 54.58 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 12.2 | 54.17 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 18.01 | 53.63 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 15.2 | 52.94 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 18.76 | 52.08 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 17.26 | 48.17 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 14.63 | 47.56 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 14.82 | 47.02 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 15.57 | 46.89 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 25.52 | 46.42 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 12.57 | 43.23 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 17.82 | 35.45 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 17.45 | 33.21 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 24.58 | 33.08 |
| HORVU1Hr1G043930.8 | Barley | plastid | 19.89 | 25.18 |
| HORVU6Hr1G026280.2 | Barley | plastid | 18.76 | 24.69 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 24.39 | 19.01 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G103170.9 | EnsemblPlantsGene:HORVU7Hr1G103170 | Gene3D:3.10.20.90 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR000626 | InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | PANTHER:PTHR10666 |
| PANTHER:PTHR10666:SF238 | PFAM:PF00240 | PFscan:PS50053 | PRINTS:PR00348 | ScanProsite:PS00299 | SEG:seg |
| SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI000B46B503 | UniProt:A0A287XMC4 | MapMan:19.2.2.1.1 | : |
Description
No Description!
Coordinates
chrchr7H:+:613153025..613173298
Molecular Weight (calculated)
57649.5 Da
IEP (calculated)
6.545
GRAVY (calculated)
-0.455
Length
533 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TXXXITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTXXX XXXEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFXXXXXX XXXXXEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI
501: FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGH
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TXXXITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTXXX XXXEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFXXXXXX XXXXXEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID NVKAKIQDKE GIPPDQQRLI
501: FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGH
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGMQIFVK TLTGKTITLE VESSDTIDNV KAKIQDKEGI PPDQQRLIFA GKQLEDGRTL ADYNIQKEST LHLVLRLRGG MQIFVKTLTG KTITLEVESS
401: DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGF
Arabidopsis Description
UBQ10Polyubiquitin 10 [Source:UniProtKB/Swiss-Prot;Acc:Q8H159]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.