Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU3Hr1G018030.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36170.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
| AT3G52590.1 | HORVU3Hr1G018030.1 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G040980.1 | Barley | cytosol | 44.55 | 98.0 |
| HORVU4Hr1G065100.3 | Barley | cytosol | 88.18 | 86.61 |
| TraesCS4A01G306500.1 | Wheat | cytosol | 89.09 | 75.97 |
| TraesCS4B01G008400.1 | Wheat | cytosol | 89.09 | 75.97 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 89.09 | 75.97 |
| GSMUA_Achr8P32920_001 | Banana | cytosol | 88.18 | 75.78 |
| PGSC0003DMT400047686 | Potato | cytosol | 88.18 | 75.78 |
| PGSC0003DMT400013958 | Potato | cytosol | 88.18 | 75.78 |
| EER96363 | Sorghum | cytosol | 88.18 | 75.19 |
| EER92591 | Sorghum | cytosol | 88.18 | 75.19 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 88.18 | 75.19 |
| VIT_08s0007g03030.t01 | Wine grape | cytosol | 87.27 | 75.0 |
| KRH67947 | Soybean | cytosol | 87.27 | 75.0 |
| KRH64348 | Soybean | cytosol, endoplasmic reticulum | 87.27 | 75.0 |
| KRH53585 | Soybean | cytosol | 87.27 | 75.0 |
| KRG96204 | Soybean | cytosol | 87.27 | 75.0 |
| AT3G52590.1 | Thale cress | cytosol | 86.36 | 74.22 |
| VIT_16s0098g01190.t01 | Wine grape | cytosol | 86.36 | 74.22 |
| AT2G36170.1 | Thale cress | cytosol | 86.36 | 74.22 |
| TraesCS4B01G233100.1 | Wheat | cytosol | 89.09 | 63.64 |
| KRG99541 | Soybean | cytosol | 63.64 | 63.06 |
| HORVU7Hr1G109650.2 | Barley | cytosol | 79.09 | 62.14 |
| TraesCS4D01G234300.1 | Wheat | cytosol | 89.09 | 62.03 |
| TraesCS4A01G077000.1 | Wheat | cytosol | 89.09 | 62.03 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 64.55 | 59.17 |
| HORVU5Hr1G072680.1 | Barley | cytosol | 76.36 | 55.63 |
| HORVU7Hr1G113500.1 | Barley | cytosol, extracellular | 72.73 | 52.29 |
| HORVU2Hr1G104410.26 | Barley | cytosol | 80.91 | 50.28 |
| HORVU6Hr1G014910.1 | Barley | cytosol | 68.18 | 45.73 |
| HORVU4Hr1G061900.2 | Barley | nucleus, plastid | 79.09 | 45.55 |
| HORVU1Hr1G023660.1 | Barley | extracellular | 72.73 | 44.69 |
| HORVU7Hr1G103160.4 | Barley | cytosol | 72.73 | 44.2 |
| HORVU7Hr1G029150.2 | Barley | cytosol | 72.73 | 43.96 |
| HORVU5Hr1G056730.1 | Barley | cytosol, plastid | 65.45 | 42.86 |
| HORVU7Hr1G029070.1 | Barley | cytosol | 71.82 | 42.02 |
| HORVU7Hr1G029100.1 | Barley | cytosol | 72.73 | 41.88 |
| HORVU5Hr1G065170.1 | Barley | cytosol | 72.73 | 40.61 |
| CDY00254 | Canola | cytosol | 39.09 | 40.57 |
| HORVU7Hr1G103380.2 | Barley | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 56.36 | 40.0 |
| HORVU3Hr1G014150.2 | Barley | cytosol | 71.82 | 38.92 |
| HORVU3Hr1G014180.3 | Barley | cytosol | 71.82 | 38.92 |
| HORVU3Hr1G111000.1 | Barley | cytosol | 51.82 | 37.25 |
| HORVU7Hr1G103550.4 | Barley | cytosol | 72.73 | 34.93 |
| HORVU6Hr1G029050.1 | Barley | cytosol | 60.91 | 33.84 |
| HORVU6Hr1G014970.1 | Barley | plastid | 73.64 | 33.75 |
| HORVU0Hr1G038500.2 | Barley | cytosol | 70.91 | 32.23 |
| HORVU6Hr1G026200.5 | Barley | cytosol | 72.73 | 31.87 |
| HORVU2Hr1G104440.1 | Barley | cytosol | 80.91 | 31.79 |
| HORVU6Hr1G016150.3 | Barley | cytosol | 53.64 | 30.57 |
| HORVU1Hr1G087690.8 | Barley | nucleus | 70.91 | 29.1 |
| HORVU7Hr1G102840.1 | Barley | endoplasmic reticulum, extracellular, vacuole | 72.73 | 25.16 |
| HORVU5Hr1G019590.12 | Barley | extracellular | 74.55 | 24.92 |
| HORVU6Hr1G021700.4 | Barley | cytosol | 71.82 | 23.37 |
| HORVU3Hr1G110900.1 | Barley | cytosol | 47.27 | 23.11 |
| HORVU7Hr1G103330.1 | Barley | cytosol | 71.82 | 20.1 |
| HORVU1Hr1G043930.8 | Barley | plastid | 73.64 | 19.24 |
| HORVU5Hr1G019600.6 | Barley | cytosol | 32.73 | 19.15 |
| HORVU6Hr1G026260.1 | Barley | cytosol, extracellular, plasma membrane | 72.73 | 17.17 |
| HORVU3Hr1G110970.1 | Barley | cytosol, nucleus, plastid | 45.45 | 17.06 |
| HORVU6Hr1G020140.6 | Barley | cytosol | 28.18 | 16.15 |
| HORVU7Hr1G103170.9 | Barley | cytosol, plasma membrane | 71.82 | 14.82 |
| HORVU4Hr1G089720.1 | Barley | nucleus | 40.91 | 11.36 |
| HORVU6Hr1G026280.2 | Barley | plastid | 38.18 | 10.37 |
| HORVU5Hr1G094230.2 | Barley | cytosol | 36.36 | 5.85 |
| HORVU7Hr1G107010.1 | Barley | cytosol | 3.64 | 2.61 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | UniProt:A0A287MWL5 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:HORVU4Hr1G001170 | EnsemblPlants:HORVU4Hr1G001170.5 | InterPro:IPR000626 | InterPro:IPR038587 |
| InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 | ScanProsite:PS00299 | PFscan:PS50053 |
| PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | SMART:SM00213 | SUPFAM:SSF54236 | UniParc:UPI000B4613F7 |
| InterPro:Ubiquitin | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : |
Description
No Description!
Coordinates
chrchr4H:+:1791494..1792119
Molecular Weight (calculated)
12587.4 Da
IEP (calculated)
9.178
GRAVY (calculated)
-0.347
Length
110 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLQALARKYN QEKMICRKFD
101: TTRLYFVSCL
101: TTRLYFVSCL
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYAIEGG SVLHLVLALR GGLL
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYAIEGG SVLHLVLALR GGLL
Arabidopsis Description
RUB2UBQ7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL95]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.