CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23226	Canola	cytosol, nucleus, plastid	33.96	50.7
CDY39163	Canola	cytosol	41.51	43.56
HORVU4Hr1G001170.5	Barley	cytosol	40.57	39.09
HORVU4Hr1G065100.3	Barley	cytosol	40.57	38.39
PGSC0003DMT400013958	Potato	cytosol	40.57	33.59
GSMUA_Achr8P32920_001	Banana	cytosol	40.57	33.59
CDX95351	Canola	cytosol	40.57	33.59
CDX84576	Canola	cytosol	40.57	33.59
CDX84153	Canola	cytosol	40.57	33.59
PGSC0003DMT400047686	Potato	cytosol	40.57	33.59
CDX79660	Canola	cytosol	40.57	33.59
CDX78108	Canola	cytosol	40.57	33.59
CDX75066	Canola	cytosol	40.57	33.59
CDX75065	Canola	cytosol	40.57	33.59
CDX73619	Canola	cytosol	40.57	33.33
TraesCS4A01G306500.1	Wheat	cytosol	40.57	33.33
TraesCS4B01G008400.1	Wheat	cytosol	40.57	33.33
TraesCS4D01G006900.1	Wheat	cytosol	40.57	33.33
EER96363	Sorghum	cytosol	40.57	33.33
EER92591	Sorghum	cytosol	40.57	33.33
Zm00001d005334_P001	Maize	cytosol, plastid	40.57	33.33
CDX79186	Canola	golgi, vacuole	47.17	30.67
TraesCS4B01G233100.1	Wheat	cytosol	40.57	27.92
CDY50712	Canola	cytosol	40.57	27.56
CDY27155	Canola	cytosol	39.62	27.27
CDY12428	Canola	cytosol	39.62	27.27
TraesCS4A01G077000.1	Wheat	cytosol	40.57	27.22
CDY31710	Canola	cytosol	40.57	27.22
TraesCS4D01G234300.1	Wheat	cytosol	40.57	27.22
CDX84182	Canola	cytosol	40.57	27.04
CDY12472	Canola	cytosol	39.62	26.92
CDY04715	Canola	cytosol	39.62	26.92
CDY44146	Canola	cytosol	39.62	26.92
CDY25783	Canola	cytosol	39.62	26.92
CDX76623	Canola	cytosol	39.62	26.75
CDX67885	Canola	cytosol	39.62	26.75
CDX83344	Canola	cytosol	39.62	26.75
CDY25100	Canola	cytosol	39.62	26.75
CDX93983	Canola	cytosol	39.62	26.75
CDY11410	Canola	cytosol	39.62	26.75
CDY66301	Canola	cytosol	39.62	26.75
CDY50916	Canola	cytosol	39.62	26.75
CDX77550	Canola	cytosol	38.68	26.28
CDX79728	Canola	cytosol	33.02	15.42
CDY29243	Canola	cytosol	32.08	13.77
CDX95544	Canola	cytosol	5.66	7.79
CDY71299	Canola	cytosol	5.66	7.32
CDY71775	Canola	cytosol	5.66	7.23
CDY70361	Canola	cytosol	5.66	5.71
CDY46367	Canola	cytosol	3.77	2.61

Protein Annotations

EnsemblPlants:CDY00254	EnsemblPlantsGene:GSBRNA2T00109807001	Gene3D:3.10.20.90	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	PANTHER:PTHR10666	PANTHER:PTHR10666:SF240
PFAM:PF00240	PFscan:PS50053	PRINTS:PR00348	ProteinID:CDY00254	ProteinID:CDY00254.1	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI0004EE611B	MapMan:35.1	:	:	:

Description

BnaA06g21550D

Coordinates

chrLK031917:+:430913..431731

Molecular Weight (calculated)

12084.4 Da

IEP (calculated)

10.056

GRAVY (calculated)

-0.917

Length

106 amino acids

Sequence
(BLAST)

001: MDNSSKPLLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRKIENRG KTERGRRSSE
101: WTNQRD

Best Arabidopsis Sequence Match ( AT4G05050.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ11Polyubiquitin [Source:UniProtKB/TrEMBL;Acc:Q8H0Y0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.