CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033420.1-P	Field mustard	cytosol, nucleus, plastid	100.0	100.0
CDY39163	Canola	cytosol	63.38	44.55
CDY71299	Canola	cytosol	45.07	39.02
CDX95544	Canola	cytosol	42.25	38.96
CDY71775	Canola	cytosol	45.07	38.55
CDY50712	Canola	cytosol	74.65	33.97
CDY00254	Canola	cytosol	50.7	33.96
CDY27155	Canola	cytosol	73.24	33.77
CDY12428	Canola	cytosol	73.24	33.77
PGSC0003DMT400057275	Potato	cytosol	90.14	33.68
CDY31710	Canola	cytosol	74.65	33.54
CDX84182	Canola	cytosol	74.65	33.33
CDX77550	Canola	cytosol	71.83	32.69
CDY70361	Canola	cytosol	46.48	31.43
Os06t0673500-01	Rice	cytosol	87.32	29.67
TraesCS5A01G551700.1	Wheat	cytosol	64.79	28.75
CDX95351	Canola	cytosol	50.7	28.12
CDX75065	Canola	cytosol	50.7	28.12
CDX75066	Canola	cytosol	50.7	28.12
CDX84576	Canola	cytosol	50.7	28.12
CDX84153	Canola	cytosol	50.7	28.12
CDX79660	Canola	cytosol	50.7	28.12
CDX78108	Canola	cytosol	50.7	28.12
CDX73619	Canola	cytosol	50.7	27.91
Solyc11g005640.1.1	Tomato	cytosol	78.87	25.23
CDY04715	Canola	cytosol	50.7	23.08
CDY44146	Canola	cytosol	50.7	23.08
CDY25783	Canola	cytosol	50.7	23.08
CDY12472	Canola	cytosol	50.7	23.08
CDY66301	Canola	cytosol	49.3	22.29
CDY50916	Canola	cytosol	49.3	22.29
CDX67885	Canola	cytosol	49.3	22.29
CDY25100	Canola	cytosol	49.3	22.29
CDY11410	Canola	cytosol	49.3	22.29
CDX93983	Canola	cytosol	49.3	22.29
CDX83344	Canola	cytosol	49.3	22.29
CDX76623	Canola	cytosol	49.3	22.29
CDX79186	Canola	golgi, vacuole	47.89	20.86
CDX79728	Canola	cytosol	63.38	19.82
CDY29243	Canola	cytosol	64.79	18.62
CDY46367	Canola	cytosol	39.44	18.3
TraesCS6B01G012500.1	Wheat	cytosol	61.97	17.96
TraesCSU01G125900.1	Wheat	cytosol	64.79	14.74

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A078GCW5	EnsemblPlants:CDY23226	ProteinID:CDY23226	ProteinID:CDY23226.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00021775001	InterPro:IPR000626	PFAM:PF00240
PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF240	SMART:SM00213
SUPFAM:SSF54236	UniParc:UPI000254545A	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom

Description

BnaA04g05330DBnaA04g05330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GCW5]

Coordinates

chrLK032141:+:527602..528489

Molecular Weight (calculated)

7970.6 Da

IEP (calculated)

6.800

GRAVY (calculated)

-0.438

Length

71 amino acids

Sequence
(BLAST)

1: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QEKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKSTFIKSL S

Best Arabidopsis Sequence Match ( AT2G36170.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.