CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71775	Canola	cytosol	23.48	69.88
CDY70361	Canola	cytosol	29.55	69.52
CDY71299	Canola	cytosol	23.08	69.51
TraesCSU01G018500.1	Wheat	cytosol	55.06	68.34
CDY39163	Canola	cytosol	27.94	68.32
CDY23226	Canola	cytosol, nucleus, plastid	18.62	64.79
CDX95544	Canola	cytosol	17.81	57.14
CDY27155	Canola	cytosol	34.41	55.19
CDY12428	Canola	cytosol	34.41	55.19
CDY46367	Canola	cytosol	34.01	54.9
CDY50712	Canola	cytosol	34.41	54.49
CDX77550	Canola	cytosol	34.01	53.85
CDY31710	Canola	cytosol	34.41	53.8
CDX84182	Canola	cytosol	34.41	53.46
CDX78108	Canola	cytosol	24.29	46.88
CDX79660	Canola	cytosol	24.29	46.88
CDX75066	Canola	cytosol	24.29	46.88
CDX84153	Canola	cytosol	24.29	46.88
CDX84576	Canola	cytosol	24.29	46.88
CDX95351	Canola	cytosol	24.29	46.88
CDX75065	Canola	cytosol	24.29	46.88
CDX73619	Canola	cytosol	24.29	46.51
CDY25100	Canola	cytosol	27.53	43.31
CDY11410	Canola	cytosol	27.53	43.31
CDX93983	Canola	cytosol	27.53	43.31
CDX83344	Canola	cytosol	27.53	43.31
CDY50916	Canola	cytosol	27.53	43.31
CDY66301	Canola	cytosol	27.53	43.31
CDX76623	Canola	cytosol	27.53	43.31
CDX67885	Canola	cytosol	27.53	43.31
CDY12472	Canola	cytosol	26.32	41.67
CDY25783	Canola	cytosol	26.32	41.67
CDY04715	Canola	cytosol	26.32	41.67
CDY44146	Canola	cytosol	26.32	41.67
CDX79186	Canola	golgi, vacuole	24.29	36.81
CDX79728	Canola	cytosol	32.79	35.68
CDY00254	Canola	cytosol	13.77	32.08

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078GXA3	UniProt:A0A078GXA3	EnsemblPlants:CDY29243	ProteinID:CDY29243
ProteinID:CDY29243.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00042174001	InterPro:IPR000626
PFAM:PF00240	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF238
SMART:SM00213	SUPFAM:SSF54236	UniParc:UPI0004EDFA87	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

BnaA06g25140DBnaA06g25140D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GXA3]

Coordinates

chrLK032233:-:469245..470595

Molecular Weight (calculated)

28083.2 Da

IEP (calculated)

7.448

GRAVY (calculated)

-0.177

Length

247 amino acids

Sequence
(BLAST)

001: MQIFVRFVTG KSITLLVQRS DTIDNVKEMI EDKEGVPADQ QRLIFVGNQM EDHRTLADYN IQKDSRFMKI FVKFLAGKTI ALMVQSSCTI DSVKTMIQRK
101: EGFPTDQQCL LLAGYQIEDD STLADYNIQQ DSTLHCVLKL GGSMRIFIKT LRDKIIALDE STLHLRYLGD GMQIFVKTLS GKTITLAVDS SDIVENVKAK
201: IQEKDGLPPN RQIITYAGKL LEDGRTLAYY NIQKESTLEL FCKFHIK

Best Arabidopsis Sequence Match ( AT5G20620.2 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGMQ IFVKTLTGKT ITLEVESSDT IDNVKAKIQD KEGIPPDQQR LIFAGKQLED GRTLADYNIQ KESTLHLVLR
301: LRGGSF

Arabidopsis Description

UBQ4Polyubiquitin 4 [Source:UniProtKB/Swiss-Prot;Acc:P0CH32]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.