Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G36170.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT2G36170.1 | CDY17621 | AT2G01950.1 | 19000166 |
| AT3G52590.1 | CDY03088 | AT2G01950.1 | 19000166 |
| AT3G52590.1 | CDY17621 | AT2G01950.1 | 19000166 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95351 | Canola | cytosol | 99.22 | 100.0 |
| CDX84576 | Canola | cytosol | 99.22 | 100.0 |
| CDX75065 | Canola | cytosol | 99.22 | 100.0 |
| CDX75066 | Canola | cytosol | 99.22 | 100.0 |
| VIT_08s0007g03030.t01 | Wine grape | cytosol | 99.22 | 100.0 |
| KRG96204 | Soybean | cytosol | 99.22 | 100.0 |
| CDX78108 | Canola | cytosol | 99.22 | 100.0 |
| CDX84153 | Canola | cytosol | 99.22 | 100.0 |
| CDX79660 | Canola | cytosol | 99.22 | 100.0 |
| KRH64348 | Soybean | cytosol, endoplasmic reticulum | 99.22 | 100.0 |
| AT3G52590.1 | Thale cress | cytosol | 98.45 | 99.22 |
| AT2G36170.1 | Thale cress | cytosol | 98.45 | 99.22 |
| TraesCS4A01G306500.1 | Wheat | cytosol | 97.67 | 97.67 |
| TraesCS4B01G008400.1 | Wheat | cytosol | 97.67 | 97.67 |
| TraesCS4D01G006900.1 | Wheat | cytosol | 97.67 | 97.67 |
| EER96363 | Sorghum | cytosol | 97.67 | 97.67 |
| Zm00001d005334_P001 | Maize | cytosol, plastid | 97.67 | 97.67 |
| EER92591 | Sorghum | cytosol | 97.67 | 97.67 |
| TraesCS4B01G233100.1 | Wheat | cytosol | 97.67 | 81.82 |
| TraesCS4D01G234300.1 | Wheat | cytosol | 97.67 | 79.75 |
| TraesCS4A01G077000.1 | Wheat | cytosol | 97.67 | 79.75 |
| CDY39163 | Canola | cytosol | 46.51 | 59.41 |
| CDY04715 | Canola | cytosol | 65.12 | 53.85 |
| CDY12472 | Canola | cytosol | 65.12 | 53.85 |
| CDY25783 | Canola | cytosol | 65.12 | 53.85 |
| CDY44146 | Canola | cytosol | 65.12 | 53.85 |
| CDX67885 | Canola | cytosol | 65.12 | 53.5 |
| CDX76623 | Canola | cytosol | 65.12 | 53.5 |
| CDX83344 | Canola | cytosol | 65.12 | 53.5 |
| CDX93983 | Canola | cytosol | 65.12 | 53.5 |
| CDY66301 | Canola | cytosol | 65.12 | 53.5 |
| CDY50916 | Canola | cytosol | 65.12 | 53.5 |
| CDY11410 | Canola | cytosol | 65.12 | 53.5 |
| CDY25100 | Canola | cytosol | 65.12 | 53.5 |
| CDY12428 | Canola | cytosol | 62.79 | 52.6 |
| CDY27155 | Canola | cytosol | 62.79 | 52.6 |
| CDY50712 | Canola | cytosol | 63.57 | 52.56 |
| CDY31710 | Canola | cytosol | 63.57 | 51.9 |
| CDX84182 | Canola | cytosol | 63.57 | 51.57 |
| CDX77550 | Canola | cytosol | 62.02 | 51.28 |
| CDY23226 | Canola | cytosol, nucleus, plastid | 27.91 | 50.7 |
| CDX79186 | Canola | golgi, vacuole | 62.79 | 49.69 |
| CDY00254 | Canola | cytosol | 33.33 | 40.57 |
| CDY29243 | Canola | cytosol | 46.51 | 24.29 |
| CDX79728 | Canola | cytosol | 41.09 | 23.35 |
| CDY71299 | Canola | cytosol | 7.75 | 12.2 |
| CDY71775 | Canola | cytosol | 7.75 | 12.05 |
| CDY70361 | Canola | cytosol | 8.53 | 10.48 |
| CDX95544 | Canola | cytosol | 5.43 | 9.09 |
| CDY46367 | Canola | cytosol | 8.53 | 7.19 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | GO:A0A078CBQ2 | EnsemblPlants:CDX73619 | ProteinID:CDX73619 |
| ProteinID:CDX73619.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00109185001 |
| InterPro:IPR000626 | InterPro:IPR038587 | InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 |
| ScanProsite:PS00299 | PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd |
| SMART:SM00213 | SMART:SM01377 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI0004EF49E4 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : | : |
Description
BnaC08g23840D
Coordinates
chrLK031799:-:1672937..1674189
Molecular Weight (calculated)
14745.2 Da
IEP (calculated)
10.606
GRAVY (calculated)
-0.619
Length
129 amino acids
Sequence
(BLAST)
(BLAST)
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKAESTLHL VLRLRGGIIE PSLMALARKY NQDKMICRKC
101: YARLHPRAVN CRKKKCGHSN QLRPKKKIK
101: YARLHPRAVN CRKKKCGHSN QLRPKKKIK
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK VKTLTGKEIE IDIEPTDTID
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYAIEGG SVLHLVLALR GGLL
101: RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKDYAIEGG SVLHLVLALR GGLL
Arabidopsis Description
RUB2UBQ7 [Source:UniProtKB/TrEMBL;Acc:A0A178VL95]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.