CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU92006

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G36170.1	OQU92006	AT2G01950.1	19000166
AT3G52590.1	OQU92006	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92591	Sorghum	cytosol	100.0	100.0
TraesCS4A01G306500.1	Wheat	cytosol	98.45	98.45
TraesCS4B01G008400.1	Wheat	cytosol	98.45	98.45
TraesCS4D01G006900.1	Wheat	cytosol	98.45	98.45
CDX95351	Canola	cytosol	97.67	98.44
KRH67947	Soybean	cytosol	97.67	98.44
KRH64348	Soybean	cytosol, endoplasmic reticulum	97.67	98.44
KRH53585	Soybean	cytosol	97.67	98.44
KRG96204	Soybean	cytosol	97.67	98.44
VIT_08s0007g03030.t01	Wine grape	cytosol	97.67	98.44
CDX84576	Canola	cytosol	97.67	98.44
CDX84153	Canola	cytosol	97.67	98.44
CDX79660	Canola	cytosol	97.67	98.44
CDX78108	Canola	cytosol	97.67	98.44
CDX75066	Canola	cytosol	97.67	98.44
CDX75065	Canola	cytosol	97.67	98.44
CDX73619	Canola	cytosol	97.67	97.67
PGSC0003DMT400000364	Potato	cytosol	96.9	97.66
GSMUA_Achr8P32920_001	Banana	cytosol	96.9	97.66
VIT_16s0098g01190.t01	Wine grape	cytosol	96.9	97.66
PGSC0003DMT400013958	Potato	cytosol	96.9	97.66
PGSC0003DMT400031900	Potato	cytosol	96.9	97.66
PGSC0003DMT400047686	Potato	cytosol	96.9	97.66
Solyc01g096290.2.1	Tomato	cytosol	96.9	97.66
Solyc03g082570.2.1	Tomato	cytosol	96.9	97.66
Solyc08g083120.2.1	Tomato	cytosol, nucleus	96.9	97.66
AT2G36170.1	Thale cress	cytosol	96.9	97.66
GSMUA_Achr8P07770_001	Banana	cytosol, unclear	96.9	97.66
AT3G52590.1	Thale cress	cytosol	96.9	97.66
GSMUA_Achr5P00970_001	Banana	cytosol	96.9	97.66
GSMUA_Achr11P...	Banana	cytosol	96.12	96.88
EER89210	Sorghum	cytosol	58.14	94.94
Solyc08g008590.2.1	Tomato	cytosol, nucleus	96.12	91.18
PGSC0003DMT400015022	Potato	cytosol	91.47	90.08
HORVU4Hr1G001170.5	Barley	cytosol	75.19	88.18
HORVU4Hr1G065100.3	Barley	cytosol	75.97	87.5
TraesCS4B01G233100.1	Wheat	cytosol	98.45	82.47
EER97248	Sorghum	cytosol	86.05	81.62
TraesCS4D01G234300.1	Wheat	cytosol	98.45	80.38
TraesCS4A01G077000.1	Wheat	cytosol	98.45	80.38
EER99330	Sorghum	cytosol	86.05	77.62
EER97249	Sorghum	cytosol	81.4	74.47
OQU89356	Sorghum	cytosol	79.07	73.38
KXG35893	Sorghum	cytosol	80.62	73.24
KRG99541	Soybean	cytosol	58.14	67.57
KXG39742	Sorghum	cytosol	73.64	66.43
Solyc06g053210.2.1	Tomato	cytosol	87.6	60.11
OQU89357	Sorghum	cytosol, extracellular	55.81	57.14
EES02888	Sorghum	cytosol	65.12	54.19
EES17768	Sorghum	cytosol	65.12	54.19
EER88734	Sorghum	cytosol	63.57	53.59
EER96746	Sorghum	cytosol	63.57	53.59
CDY00254	Canola	cytosol	33.33	40.57
KXG38267	Sorghum	cytosol	46.51	37.5
KXG38689	Sorghum	cytosol	34.88	32.85
KXG20618	Sorghum	cytosol, plastid	68.22	32.23
EES01965	Sorghum	cytosol	68.22	28.85
OQU90737	Sorghum	cytosol	37.98	28.0
EER90271	Sorghum	cytosol	69.77	23.62
KXG29530	Sorghum	cytosol	69.77	23.62
KXG29523	Sorghum	cytosol	69.77	23.62
KXG20644	Sorghum	cytosol	69.77	23.62
OQU83265	Sorghum	cytosol	39.53	23.08
KXG28223	Sorghum	mitochondrion	36.43	21.86
EES05681	Sorghum	cytosol	69.77	19.61
OQU76939	Sorghum	cytosol, plastid	68.22	19.34
KXG29531	Sorghum	cytosol	66.67	18.82
EES11473	Sorghum	cytosol	9.3	7.84

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	EntrezGene:8062547	EntrezGene:8085240	UniProt:C5WRN8
ProteinID:EER92591.1	EnsemblPlants:EER96363	ProteinID:EER96363	ProteinID:EER96363.1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	PFAM:PF00240
PFAM:PF01020	PRINTS:PR00348	ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255
InterPro:Ribosomal_L40e	SMART:SM00213	SMART:SM01377	EnsemblPlantsGene:SORBI_3002G135200	SUPFAM:SSF54236	unigene:Sbi.15795
unigene:Sbi.18411	UniParc:UPI00016FC529	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom
RefSeq:XP_002459842.1	RefSeq:XP_002465593.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:20168985..20171576

Molecular Weight (calculated)

14759.2 Da

IEP (calculated)

10.606

GRAVY (calculated)

-0.676

Length

129 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLQALARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRAKKKIKN

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.