Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92591 | Sorghum | cytosol | 66.43 | 73.64 |
| EER96363 | Sorghum | cytosol | 66.43 | 73.64 |
| EER89210 | Sorghum | cytosol | 39.86 | 72.15 |
| EER99330 | Sorghum | cytosol | 67.83 | 67.83 |
| EER97248 | Sorghum | cytosol | 62.94 | 66.18 |
| HORVU4Hr1G061980.1 | Barley | cytosol | 55.24 | 65.83 |
| KXG35893 | Sorghum | cytosol | 64.34 | 64.79 |
| EER97249 | Sorghum | cytosol | 63.64 | 64.54 |
| OQU89356 | Sorghum | cytosol | 61.54 | 63.31 |
| TraesCS5B01G524500.1 | Wheat | cytosol | 44.06 | 63.0 |
| TraesCS5B01G524700.1 | Wheat | cytosol | 60.14 | 61.87 |
| TraesCS5B01G524600.1 | Wheat | cytosol | 58.04 | 60.58 |
| TraesCS2D01G092300.1 | Wheat | cytosol | 60.14 | 58.9 |
| TraesCS2A01G093300.1 | Wheat | cytosol | 57.34 | 55.78 |
| TraesCS2D01G092200.1 | Wheat | cytosol | 59.44 | 55.19 |
| TraesCS2B01G107600.1 | Wheat | cytosol | 53.85 | 55.0 |
| TraesCS2B01G107800.1 | Wheat | cytosol | 58.74 | 54.9 |
| OQU89357 | Sorghum | cytosol, extracellular | 45.45 | 51.59 |
| EES17768 | Sorghum | cytosol | 46.15 | 42.58 |
| EES02888 | Sorghum | cytosol | 46.15 | 42.58 |
| EER88734 | Sorghum | cytosol | 43.36 | 40.52 |
| EER96746 | Sorghum | cytosol | 43.36 | 40.52 |
| KXG38267 | Sorghum | cytosol | 37.06 | 33.12 |
| KXG38689 | Sorghum | cytosol | 26.57 | 27.74 |
| KXG20618 | Sorghum | cytosol, plastid | 49.65 | 26.01 |
| OQU90737 | Sorghum | cytosol | 28.67 | 23.43 |
| EES01965 | Sorghum | cytosol | 49.65 | 23.28 |
| KXG29530 | Sorghum | cytosol | 51.05 | 19.16 |
| KXG29523 | Sorghum | cytosol | 51.05 | 19.16 |
| KXG20644 | Sorghum | cytosol | 51.05 | 19.16 |
| EER90271 | Sorghum | cytosol | 51.05 | 19.16 |
| OQU83265 | Sorghum | cytosol | 27.27 | 17.65 |
| KXG28223 | Sorghum | mitochondrion | 24.48 | 16.28 |
| EES05681 | Sorghum | cytosol | 51.05 | 15.9 |
| OQU76939 | Sorghum | cytosol, plastid | 49.65 | 15.6 |
| KXG29531 | Sorghum | cytosol | 48.25 | 15.1 |
| EES11473 | Sorghum | cytosol | 9.09 | 8.5 |
Protein Annotations
| MapMan:17.1.2.1.43 | Gene3D:2.20.28.70 | Gene3D:3.10.20.90 | UniProt:A0A1B6QP88 | GO:GO:0003674 | GO:GO:0003735 |
| GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000626 | InterPro:IPR038587 | EnsemblPlants:KXG39742 | ProteinID:KXG39742 |
| ProteinID:KXG39742.1 | InterPro:L40e_sf | PFAM:PF00240 | PFAM:PF01020 | PRINTS:PR00348 | ScanProsite:PS00299 |
| PFscan:PS50053 | PANTHER:PTHR10666 | PANTHER:PTHR10666:SF255 | InterPro:Ribosomal_L40e | InterPro:Ribosomal_zn-bd | SMART:SM00213 |
| SMART:SM01377 | EnsemblPlantsGene:SORBI_3001G430900 | SUPFAM:SSF54236 | SUPFAM:SSF57829 | UniParc:UPI00081AE775 | InterPro:Ubiquitin |
| InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_CS | InterPro:Ubiquitin_dom | : | : | : |
Description
hypothetical protein
Coordinates
chr1:-:71006916..71008606
Molecular Weight (calculated)
16428.2 Da
IEP (calculated)
10.112
GRAVY (calculated)
-0.365
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MMQVFLKTVT GKTVILEVES SDTIAAVKAK IQDKEGIAVE EQRLIFAGTQ LEDGRTLVDY DIRKESTLHL ELGLLGGAYV AWWISPNLRA LAYKYNVNKM
101: ICRKCYARLP LGAKNCRKKK CGHSNQLRLK KCRDRHRFYQ STY
101: ICRKCYARLP LGAKNCRKKK CGHSNQLRLK KCRDRHRFYQ STY
001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK
Arabidopsis Description
RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.