CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G510500.1	Wheat	mitochondrion	36.2	70.18
TraesCS3A01G503700.1	Wheat	cytosol, mitochondrion	43.89	62.58
TraesCS3D01G510600.1	Wheat	cytosol	62.44	61.61
KXG28223	Sorghum	mitochondrion	58.82	60.47
TraesCS3D01G510400.1	Wheat	mitochondrion	60.63	59.82
TraesCS3D01G510800.1	Wheat	cytosol	60.18	59.38
TraesCS3B01G567200.1	Wheat	mitochondrion	59.28	58.48
EER89210	Sorghum	cytosol	20.81	58.23
TraesCS3B01G567300.1	Wheat	mitochondrion	56.11	56.88
HORVU3Hr1G111000.1	Barley	cytosol	35.75	51.63
TraesCS3D01G510200.1	Wheat	cytosol	49.32	48.44
EER96746	Sorghum	cytosol	31.67	45.75
EER88734	Sorghum	cytosol	31.67	45.75
TraesCS3B01G569700.1	Wheat	cytosol	63.8	43.93
TraesCS3D01G511500.1	Wheat	nucleus	58.82	43.48
TraesCS3B01G568000.1	Wheat	cytosol	57.92	42.95
TraesCS3D01G511900.1	Wheat	mitochondrion	63.8	42.73
KXG38689	Sorghum	cytosol	24.89	40.15
EER92591	Sorghum	cytosol	23.08	39.53
EER96363	Sorghum	cytosol	23.08	39.53
EES01965	Sorghum	cytosol	51.13	37.05
OQU89356	Sorghum	cytosol	22.17	35.25
EES02888	Sorghum	cytosol	24.43	34.84
EES17768	Sorghum	cytosol	24.43	34.84
EER99330	Sorghum	cytosol	22.17	34.27
EER97248	Sorghum	cytosol	20.81	33.82
KXG35893	Sorghum	cytosol	21.72	33.8
EER97249	Sorghum	cytosol	20.81	32.62
OQU90737	Sorghum	cytosol	24.43	30.86
KXG20618	Sorghum	cytosol, plastid	36.2	29.3
KXG39742	Sorghum	cytosol	17.65	27.27
KXG38267	Sorghum	cytosol	19.46	26.88
KXG29531	Sorghum	cytosol	49.77	24.07
CDX79728	Canola	cytosol	24.43	23.79
OQU89357	Sorghum	cytosol, extracellular	12.67	22.22
KXG29530	Sorghum	cytosol	34.39	19.95
KXG29523	Sorghum	cytosol	34.39	19.95
KXG20644	Sorghum	cytosol	34.39	19.95
EER90271	Sorghum	cytosol	34.39	19.95
EES11473	Sorghum	cytosol	12.67	18.3
OQU76939	Sorghum	cytosol, plastid	36.65	17.8
EES05681	Sorghum	cytosol	34.39	16.56

Protein Annotations

Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A1B6PRB3	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR000626	ProteinID:KXG28218.1	ProteinID:KXG28219.1	EnsemblPlants:OQU83265	ProteinID:OQU83265	ProteinID:OQU83265.1
ProteinID:OQU83266.1	PFAM:PF00240	PRINTS:PR00348	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF238
SMART:SM00213	EnsemblPlantsGene:SORBI_3005G099100	SUPFAM:SSF54236	UniParc:UPI0003C684D9	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:16221749..16223800

Molecular Weight (calculated)

24912.0 Da

IEP (calculated)

5.670

GRAVY (calculated)

-0.207

Length

221 amino acids

Sequence
(BLAST)

001: MQIFVKSPTG RTICLRVQPS DTLQTVKAKI QEREYLVYDG VRLEDNNLTL ADYGIQHRST LDLEEKMQIY VVETLAGTTI TLEVDSSETI DSIKGKIQYS
101: ERFPKVQQCL IFGDKQLEDN STLADHNISK ESTLLLVLHP LPRGTMRIKV YIGDGRIVPL EVQKSDTIAS VSLKIYEKAF VRPVQHAIYF DSTRLEGSKT
201: LAHYGIENGD TLDLIICQCG C

Best Arabidopsis Sequence Match ( AT4G02890.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGMQIF VKTLTGKTIT LEVESSDTID
101: NVKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGIPP DQQRLIFAGK
201: QLEDGRTLAD YNIQKESTLH LVLRLRGGF

Arabidopsis Description

UBQ14Polyubiquitin 14 [Source:UniProtKB/Swiss-Prot;Acc:Q3E7T8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.