CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89356	Sorghum	cytosol	65.87	59.71
EER92591	Sorghum	cytosol	57.14	55.81
EER96363	Sorghum	cytosol	57.14	55.81
EER97248	Sorghum	cytosol	57.94	53.68
EER89210	Sorghum	cytosol	31.75	50.63
EER97249	Sorghum	cytosol	56.35	50.35
EER99330	Sorghum	cytosol	56.35	49.65
KXG35893	Sorghum	cytosol	53.97	47.89
KXG39742	Sorghum	cytosol	51.59	45.45
EES02888	Sorghum	cytosol	38.89	31.61
EES17768	Sorghum	cytosol	38.89	31.61
KRH38035	Soybean	cytosol	32.54	31.54
EER96746	Sorghum	cytosol	34.92	28.76
EER88734	Sorghum	cytosol	34.92	28.76
KXG38267	Sorghum	cytosol	31.75	25.0
KXG20618	Sorghum	cytosol, plastid	42.86	19.78
KXG38689	Sorghum	cytosol	20.63	18.98
HORVU5Hr1G019600.6	Barley	cytosol	26.98	18.09
EES01965	Sorghum	cytosol	42.86	17.7
HORVU6Hr1G020140.6	Barley	cytosol	23.02	15.1
KXG20644	Sorghum	cytosol	44.44	14.7
KXG29523	Sorghum	cytosol	44.44	14.7
KXG29530	Sorghum	cytosol	44.44	14.7
EER90271	Sorghum	cytosol	44.44	14.7
OQU90737	Sorghum	cytosol	19.05	13.71
KXG28223	Sorghum	mitochondrion	22.22	13.02
OQU83265	Sorghum	cytosol	22.22	12.67
EES05681	Sorghum	cytosol	44.44	12.2
OQU76939	Sorghum	cytosol, plastid	42.86	11.87
KXG29531	Sorghum	cytosol	42.06	11.6
TraesCS6A01G119700.2	Wheat	cytosol	19.05	10.48
TraesCS5D01G087500.1	Wheat	cytosol	19.05	10.48
TraesCS5D01G391800.1	Wheat	mitochondrion	21.43	9.31
EES11473	Sorghum	cytosol	11.11	9.15
TraesCS5B01G386500.1	Wheat	nucleus	22.22	7.25
TraesCS5B01G387000.1	Wheat	cytosol	23.81	4.39
HORVU5Hr1G094230.2	Barley	cytosol	23.81	4.39

Protein Annotations

Gene3D:2.20.28.70	Gene3D:3.10.20.90	MapMan:35.1	UniProt:A0A1W0W4N6	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	EnsemblPlants:OQU89357
ProteinID:OQU89357	ProteinID:OQU89357.1	PFAM:PF00240	PFAM:PF01020	PRINTS:PR00348	PFscan:PS50053
PANTHER:PTHR10666	PANTHER:PTHR10666:SF229	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd	SMART:SM00213	SMART:SM01377
EnsemblPlantsGene:SORBI_3002G178700	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI0009DC9389	InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:56007216..56010291

Molecular Weight (calculated)

14406.0 Da

IEP (calculated)

10.197

GRAVY (calculated)

-0.433

Length

126 amino acids

Sequence
(BLAST)

001: MASRRVDVVL MINSPTLLLY GIAPDKQRLI FAGKQLEDER TLADYNIRKE CTLHLVLRLN GGGKGGCYPP KVDPNLLQLA LKYCQYKMIC RECYARNSIR
101: ANNCRKKKCG HCNEMRAKKK LAFKQA

Best Arabidopsis Sequence Match ( AT2G36170.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.