CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89210	Sorghum	cytosol	51.75	93.67
Os09t0452700-00	Rice	cytosol, extracellular, plasma membrane, plastid	86.71	88.57
TraesCS2A01G458100.1	Wheat	cytosol	86.71	87.32
TraesCS2D01G458700.1	Wheat	cytosol	86.01	86.62
TraesCS2D01G458600.1	Wheat	cytosol	86.01	86.62
TraesCS2B01G480400.1	Wheat	cytosol	86.01	86.62
TraesCS2B01G480300.1	Wheat	cytosol	86.01	86.62
TraesCS2A01G458000.1	Wheat	cytosol	86.01	86.62
EER92591	Sorghum	cytosol	77.62	86.05
EER96363	Sorghum	cytosol	77.62	86.05
EER97248	Sorghum	cytosol	80.42	84.56
EER97249	Sorghum	cytosol	79.02	80.14
KXG35893	Sorghum	cytosol	75.52	76.06
OQU89356	Sorghum	cytosol	72.03	74.1
KXG39742	Sorghum	cytosol	67.83	67.83
HORVU2Hr1G104410.26	Barley	cytosol	79.02	63.84
OQU89357	Sorghum	cytosol, extracellular	49.65	56.35
EES02888	Sorghum	cytosol	58.04	53.55
EES17768	Sorghum	cytosol	58.04	53.55
EER88734	Sorghum	cytosol	55.94	52.29
EER96746	Sorghum	cytosol	55.94	52.29
HORVU2Hr1G104440.1	Barley	cytosol	86.01	43.93
KXG38267	Sorghum	cytosol	42.66	38.12
KXG38689	Sorghum	cytosol	32.17	33.58
KXG20618	Sorghum	cytosol, plastid	61.54	32.23
EES01965	Sorghum	cytosol	61.54	28.85
OQU90737	Sorghum	cytosol	34.97	28.57
KXG29530	Sorghum	cytosol	62.94	23.62
KXG29523	Sorghum	cytosol	62.94	23.62
KXG20644	Sorghum	cytosol	62.94	23.62
EER90271	Sorghum	cytosol	62.94	23.62
OQU83265	Sorghum	cytosol	34.27	22.17
KXG28223	Sorghum	mitochondrion	32.17	21.4
EES05681	Sorghum	cytosol	62.94	19.61
OQU76939	Sorghum	cytosol, plastid	61.54	19.34
KXG29531	Sorghum	cytosol	60.14	18.82
EES11473	Sorghum	cytosol	9.09	8.5

Protein Annotations

MapMan:17.1.2.1.43	Gene3D:2.20.28.70	Gene3D:3.10.20.90	EntrezGene:8077238	UniProt:C5X7R5	EnsemblPlants:EER99330
ProteinID:EER99330	ProteinID:EER99330.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR000626	InterPro:IPR038587	InterPro:L40e_sf	PFAM:PF00240	PFAM:PF01020	PRINTS:PR00348
ScanProsite:PS00299	PFscan:PS50053	PANTHER:PTHR10666	PANTHER:PTHR10666:SF255	InterPro:Ribosomal_L40e	InterPro:Ribosomal_zn-bd
SMART:SM00213	SMART:SM01377	EnsemblPlantsGene:SORBI_3002G292500	SUPFAM:SSF54236	SUPFAM:SSF57829	UniParc:UPI0001A83E95
InterPro:Ubiquitin	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_CS	InterPro:Ubiquitin_dom	RefSeq:XP_002462809.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:67024290..67025921

Molecular Weight (calculated)

16125.7 Da

IEP (calculated)

10.711

GRAVY (calculated)

-0.752

Length

143 amino acids

Sequence
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL DDGRTLADYN IQKESTLHLV LRLRGGSRGG YPTTISPSLR ELAQKYNENK
101: MVCRKCYARL PPRATNCRKK KCGHTNALRS KKRFMSKIGG TNK

Best Arabidopsis Sequence Match ( AT3G52590.1 )
(BLAST)

001: MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGIIEP SLMMLARKYN QDKMICRKCY
101: ARLHPRAVNC RKKKCGHSNQ LRPKKKIK

Arabidopsis Description

RPL40BUbiquitin-60S ribosomal protein L40-1 [Source:UniProtKB/Swiss-Prot;Acc:B9DHA6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.